RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 DHX29Q7Z478 1369 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SHOXO15266 292 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ZWINTO95229 277 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SSBP05455 408 aaKnown RBP eCLIP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 LDHBP07195 334 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ELAVL4P26378 380 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ATP1A2P50993 1020 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 HIC1Q14526 733 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 KARSQ15046 597 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TRIM60Q495X7 471 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 LHX8Q68G74 356 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 XPO6Q96QU8 1125 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TMEM260Q9NX78 707 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TSPYL4Q9UJ04 414 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 DNAJC16Q9Y2G8 782 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 GTF3C3Q9Y5Q9 886 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 WASF2Q9Y6W5 498 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 NOTCH1P46531 2555 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 KTN1Q86UP2 1357 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 TYW5A2RUC4 315 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 FANCGO15287 622 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ATMINO43313 823 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 CNTN5O94779 1100 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 SNRPA1P09661 255 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 CTSHP09668 335 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 CDC25BP30305 580 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ACTG1P63261 375 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF423Q2M1K9 1284 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ANO6Q4KMQ2 910 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF484Q5JVG2 852 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ARHGAP40Q5TG30 622 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 CCDC81Q6ZN84 652 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 RASAL3Q86YV0 1011 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 TMEM145Q8NBT3 493 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 SPDYE1Q8NFV5 336 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 SRPK1Q96SB4 655 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 LIMD1Q9UGP4 676 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 FBXO40Q9UH90 709 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ARAP3Q8WWN8 1544 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 MADDQ8WXG6 1647 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 BLACEA4D250 179 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 AGRPO00253 132 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 DLX3O60479 287 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 SYNCRIPO60506 623 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 PPM1AP35813 382 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 CTDSPL2Q05D32 466 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 CCDC15Q0P6D6 951 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 RINT1Q6NUQ1 792 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 PKN3Q6P5Z2 889 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ARMCX6Q7L4S7 300 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 FAM181AQ8N9Y4 354 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 UBE2FQ969M7 185 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 MAGEB10Q96LZ2 347 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 HEXIM2Q96MH2 286 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 TRIM4Q9C037 500 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 STN1Q9H668 368 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 EXO5Q9H790 373 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ATP6V0A4Q9HBG4 840 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 AASDHPPTQ9NRN7 309 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 CEP126Q9P2H0 1117 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 DDX20Q9UHI6 824 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ZMIZ1Q9ULJ6 1067 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 GPSM3Q9Y4H4 160 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 EPG5Q9HCE0 2579 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 HMGXB3Q12766 1538 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 IFIT3O14879 490 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 PDE8BO95263 885 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 HNF1AP20823 631 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 CCR3P51677 355 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 MDH1BQ5I0G3 518 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 GET4Q7L5D6 327 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 RNF135Q8IUD6 432 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 P3H2Q8IVL5 708 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 TDRD7Q8NHU6 1098 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 WHAMMQ8TF30 809 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ATP2A3Q93084 1043 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF668Q96K58 619 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 APBA2Q99767 749 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 STRADBQ9C0K7 418 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 RNF32Q9H0A6 362 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 PCDHA11Q9Y5I1 949 aa3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 ASTN2O75129 1339 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-205ENST00000426576 A0A1B0GTW7 788 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 FAM47DPA6NHR8 397 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ENC1O14682 589 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 NBNO60934 754 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 ADRB1P08588 477 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 NNMTP40261 264 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 GNAI1P63096 354 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 RHDQ02161 417 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PRKCQQ04759 706 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PDE4CQ08493 712 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 FLIIQ13045 1269 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 PPP2R5BQ15173 497 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 UVSSAQ2YD98 709 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 TOR1AIP1Q5JTV8 583 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 RNF219Q5W0B1 726 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 MOB2Q70IA6 237 aa3.16□□□□□ -1.9
CCDC88A-205ENST00000426576 SV2AQ7L0J3 742 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms