RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 COX4I2Q96KJ9 171 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 TM9SF2Q99805 663 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 SNX11Q9Y5W9 270 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 NEURL4Q96JN8 1562 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 SHOXO15266 292 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 RNASE1P07998 156 aaKnown RBP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 NMIQ13287 307 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 CREG2Q8IUH2 290 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 PIWIL2Q8TC59 973 aaKnown RBP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 SPATA32Q96LK8 384 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 PRDM14Q9GZV8 571 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 MBNL3Q9NUK0 354 aaKnown RBP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 DUSP13Q9UII6 198 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 KCNH3Q9ULD8 1083 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 SPHKAPQ2M3C7 1700 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 PIK3R4Q99570 1358 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 LTBP4Q8N2S1 1624 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 SPATA31E1Q6ZUB1 1445 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 PRAMEF1O95521 474 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 ESR1P03372 595 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 SRFP11831 508 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 GIPRP48546 466 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 COL9A2Q14055 689 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 NBPF9Q3BBW0 867 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 RALGPS1Q5JS13 557 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 AXDND1Q5T1B0 1012 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 AGBL5Q8NDL9 886 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 RC3H2Q9HBD1 1191 aaKnown RBP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 GPATCH2Q9NW75 528 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 SUCOQ9UBS9 1254 aaKnown RBP3.54□□□□□ -1.84
VPS13A-208ENST00000423463 ADGRE2Q9UHX3 823 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 PCDHA11Q9Y5I1 949 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 CLTCL1P53675 1640 aa3.54□□□□□ -1.84
VPS13A-208ENST00000423463 IQSEC2Q5JU85 1478 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 DNAJC25-GNG10A0A024R161 153 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 SSBP05455 408 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS13A-208ENST00000423463 CCDC144CPQ8IYA2 1237 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 RBBP8NLQ8NC74 664 aaPredicted RBP3.53□□□□□ -1.84
VPS13A-208ENST00000423463 LRRN4CLQ8ND94 238 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 PI4K2BQ8TCG2 481 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 SEC16BQ96JE7 1060 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 GFOD1Q9NXC2 390 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 SLAMF8Q9P0V8 285 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 CPS1P31327 1500 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 IQGAP1P46940 1657 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 ADAMTS13Q76LX8 1427 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 A0A1W2PQH9 124 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 TOM1O60784 492 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 FGRP09769 529 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 ETFBP38117 255 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 CCNFP41002 786 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 IRAK1P51617 712 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 RNF4P78317 190 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 EGR3Q06889 387 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 GNL2Q13823 731 aaKnown RBP3.53□□□□□ -1.84
VPS13A-208ENST00000423463 AUHQ13825 339 aaKnown RBP3.53□□□□□ -1.84
VPS13A-208ENST00000423463 CLEC16AQ2KHT3 1053 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 GAB4Q2WGN9 574 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 THAP5Q7Z6K1 395 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 TSPYL5Q86VY4 417 aaPredicted RBP3.53□□□□□ -1.84
VPS13A-208ENST00000423463 MCF2L2Q86YR7 1114 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 HDAC8Q9BY41 377 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 GPR62Q9BZJ7 368 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 FBXL21Q9UKT6 434 aa3.53□□□□□ -1.84
VPS13A-208ENST00000423463 POLR1AO95602 1720 aaPredicted RBP3.53□□□□□ -1.84
VPS13A-208ENST00000423463 ADGRF5Q8IZF2 1346 aa3.53□□□□□ -1.85
VPS13A-208ENST00000423463 FKTNO75072 461 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 INTS3Q68E01 1043 aaKnown RBP3.52□□□□□ -1.85
VPS13A-208ENST00000423463 SLC23A3Q6PIS1 610 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 CRTC3Q6UUV7 619 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 ADCY4Q8NFM4 1077 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 BRF1Q92994 677 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 ASCC2Q9H1I8 757 aaPredicted RBP3.52□□□□□ -1.85
VPS13A-208ENST00000423463 TRIT1Q9H3H1 467 aaKnown RBP3.52□□□□□ -1.85
VPS13A-208ENST00000423463 C14orf93Q9H972 538 aaKnown RBP3.52□□□□□ -1.85
VPS13A-208ENST00000423463 ZNF408Q9H9D4 720 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 C19orf73Q9NVV2 129 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 CBFA2T2O43439 604 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 PMS1P54277 932 aaKnown RBP3.52□□□□□ -1.85
VPS13A-208ENST00000423463 GNPTABQ3T906 1256 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 NAALADL2Q58DX5 795 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 ZPBP2Q6X784 338 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 CBLL1Q75N03 491 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 FOXP3Q9BZS1 431 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 PCDHB12Q9Y5F1 795 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 KIF1BO60333 1816 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 NEXMIFQ5QGS0 1516 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 NCOA3Q9Y6Q9 1424 aa3.52□□□□□ -1.85
VPS13A-208ENST00000423463 TMEM94Q12767 1356 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 DHX57Q6P158 1386 aaKnown RBP3.51□□□□□ -1.85
VPS13A-208ENST00000423463 B2RBV5 119 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 SMAD7O15105 426 aaKnown RBP3.51□□□□□ -1.85
VPS13A-208ENST00000423463 TAL1P17542 331 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-208ENST00000423463 CTSKP43235 329 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 HK2P52789 917 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 ERVFC1P60507 584 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 ARID5AQ03989 594 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 TAB3Q8N5C8 712 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-208ENST00000423463 TCTN2Q96GX1 697 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms