RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TTI2Q6NXR4 508 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 MREGQ8N565 214 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 TTLL11Q8NHH1 800 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 TUBGCP2Q9BSJ2 902 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 ARMT1Q9H993 441 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 SLC40A1Q9NP59 571 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 RBM12Q9NTZ6 932 aaKnown RBP11.91□□□□□ -0.5
USP54-204ENST00000422491 FAM153AQ9UHL3 310 aa11.91□□□□□ -0.5
USP54-204ENST00000422491 A0A1W2PQJ5 194 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 hCG_1642624A0A1W2PR95 340 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 CCDC189A1A4V9 331 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 PLEKP08567 350 aaPredicted RBP11.9□□□□□ -0.5
USP54-204ENST00000422491 SCP2P22307 547 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 PHKA1P46020 1223 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 TDO2P48775 406 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 SEC23AQ15436 765 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 SPA17Q15506 151 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 CFAP58Q5T655 872 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 RNF187Q5TA31 235 aaPredicted RBP11.9□□□□□ -0.5
USP54-204ENST00000422491 LMOD2Q6P5Q4 547 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 MIEF2Q96C03 454 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 TRIM47Q96LD4 638 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 MYH10P35580 1976 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 PRPF3O43395 683 aaKnown RBP11.9□□□□□ -0.5
USP54-204ENST00000422491 PRKAB2O43741 272 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 USO1O60763 962 aaKnown RBP11.9□□□□□ -0.5
USP54-204ENST00000422491 GLI1P08151 1106 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 CARSP49589 748 aaKnown RBP11.9□□□□□ -0.5
USP54-204ENST00000422491 IFT88Q13099 833 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 PPP2R5BQ15173 497 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 FIGNQ5HY92 759 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 FKBP15Q5T1M5 1219 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 CCDC42Q96M95 316 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 PSMB7Q99436 277 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 IFIH1Q9BYX4 1025 aaKnown RBP11.9□□□□□ -0.5
USP54-204ENST00000422491 MAGEC2Q9UBF1 373 aaPredicted RBP11.9□□□□□ -0.5
USP54-204ENST00000422491 PCDHA13Q9Y5I0 950 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 ALS2Q96Q42 1657 aa11.9□□□□□ -0.5
USP54-204ENST00000422491 LCA5LO95447 670 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 HNRNPH3P31942 346 aaKnown RBP11.9□□□□□ -0.51
USP54-204ENST00000422491 TBC1D8BQ0IIM8 1120 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 ITGB3BPQ13352 177 aaPredicted RBP11.9□□□□□ -0.51
USP54-204ENST00000422491 KCNB1Q14721 858 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 CEP85LQ5SZL2 805 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 CCDC181Q5TID7 509 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 IFT20Q8IY31 132 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 N4BP2L2Q92802 583 aaPredicted RBP11.9□□□□□ -0.51
USP54-204ENST00000422491 FAM89AQ96GI7 184 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 ATP6V1G3Q96LB4 118 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 DUSP9Q99956 384 aaKnown RBP11.9□□□□□ -0.51
USP54-204ENST00000422491 NFU1Q9UMS0 254 aa11.9□□□□□ -0.51
USP54-204ENST00000422491 TRPM3Q9HCF6 1732 aaPredicted RBP11.89□□□□□ -0.51
USP54-204ENST00000422491 KLRC4O43908 158 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 PCCAP05165 728 aaPredicted RBP11.89□□□□□ -0.51
USP54-204ENST00000422491 LDHAL6AQ6ZMR3 332 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 MAGEB6Q8N7X4 407 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 NOC3LQ8WTT2 800 aaKnown RBP11.89□□□□□ -0.51
USP54-204ENST00000422491 ORAI2Q96SN7 254 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 TLR10Q9BXR5 811 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 ARHGAP20Q9P2F6 1191 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 ODF2LQ9ULJ1 636 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 V9GY48 417 aaPredicted RBP11.89□□□□□ -0.51
USP54-204ENST00000422491 DOCK2Q92608 1830 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 TMCO5BA8MYB1 307 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 NF2P35240 595 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 PAFAH1B1P43034 410 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 MRPL12P52815 198 aaKnown RBP11.89□□□□□ -0.51
USP54-204ENST00000422491 NAALADL2Q58DX5 795 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 MIIPQ5JXC2 388 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 FAM228AQ86W67 206 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 IQCA1Q86XH1 822 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 GIMAP8Q8ND71 665 aaPredicted RBP11.89□□□□□ -0.51
USP54-204ENST00000422491 FAM212AQ96EL1 285 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 ERGIC2Q96RQ1 377 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 VEZTQ9HBM0 779 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 PLAGL2Q9UPG8 496 aa11.89□□□□□ -0.51
USP54-204ENST00000422491 UBR2Q8IWV8 1755 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 TNKSO95271 1327 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 RTL9Q8NET4 1388 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 ZSCAN5CA6NGD5 496 aaPredicted RBP11.88□□□□□ -0.51
USP54-204ENST00000422491 HMGB1P1B2RPK0 211 aaPredicted RBP11.88□□□□□ -0.51
USP54-204ENST00000422491 PSMA7O14818 248 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 NCK2O43639 380 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 PLEKHA8P1O95397 391 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 STAT6P42226 847 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 KIF11P52732 1056 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 ZC3H6P61129 1189 aaKnown RBP11.88□□□□□ -0.51
USP54-204ENST00000422491 PAK2Q13177 524 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 AEBP2Q6ZN18 517 aaPredicted RBP11.88□□□□□ -0.51
USP54-204ENST00000422491 ZSCAN29Q8IWY8 852 aaPredicted RBP11.88□□□□□ -0.51
USP54-204ENST00000422491 CYFIP2Q96F07 1278 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 ALS2CR12Q96Q35 445 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 UBAC1Q9BSL1 405 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 ACTR5Q9H9F9 607 aaPredicted RBP11.88□□□□□ -0.51
USP54-204ENST00000422491 SALL4Q9UJQ4 1053 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 BCORQ6W2J9 1755 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 ESYT3A0FGR9 886 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 RHOBTB3O94955 611 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 TRAPPC10P48553 1259 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 TRIM28Q13263 835 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms