RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 HLA-DQA1Q5Y7H0 255 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 LILRB2Q8N423 598 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 KCTD13Q8WZ19 329 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 COPS5Q92905 334 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 HHIPL1Q96JK4 782 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 PTCHD1Q96NR3 888 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 IPO9Q96P70 1041 aaKnown RBP3.93□□□□□ -1.78
VPS41-206ENST00000418457 CDC6Q99741 560 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 IER2Q9BTL4 223 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 GPRC5CQ9NQ84 441 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 C19orf73Q9NVV2 129 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 EBF1Q9UH73 591 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 CTNND2Q9UQB3 1225 aa3.93□□□□□ -1.78
VPS41-206ENST00000418457 ZCCHC6Q5VYS8 1495 aaKnown RBP3.92□□□□□ -1.78
VPS41-206ENST00000418457 TRBV23OR9-2A0A075B6M9 112 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 PRODHO43272 600 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 HPXP02790 462 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 THBDP07204 575 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 PABPC1P11940 636 aaKnown RBP3.92□□□□□ -1.78
VPS41-206ENST00000418457 AFMP43652 599 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 RTP1P59025 263 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 CYP4F3Q08477 520 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 MAP4K2Q12851 820 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 LAPTM5Q13571 262 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 NR0B2Q15466 257 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 PRSS53Q2L4Q9 553 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 C2orf27AQ580R0 203 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 ZC3H12BQ5HYM0 836 aaKnown RBP3.92□□□□□ -1.78
VPS41-206ENST00000418457 YOD1Q5VVQ6 348 aaPredicted RBP3.92□□□□□ -1.78
VPS41-206ENST00000418457 NSMFQ6X4W1 530 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 CEP128Q6ZU80 1094 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 CBLL1Q75N03 491 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 JMYQ8N9B5 988 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 TMEM145Q8NBT3 493 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 TMEM52Q8NDY8 209 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 ZSWIM2Q8NEG5 633 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 FLAD1Q8NFF5 587 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 FRS2Q8WU20 508 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 SLC26A8Q96RN1 970 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 CLEC1BQ9P126 229 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 ADGRE2Q9UHX3 823 aa3.92□□□□□ -1.78
VPS41-206ENST00000418457 TRBV23-1A0A0A0MS06 115 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 NPHP3-ACAD11A0A0J9YXS1 232 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 A0A1W2PQ45 241 aaPredicted RBP3.91□□□□□ -1.78
VPS41-206ENST00000418457 A0A1W2PQY0 241 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 BIN1O00499 593 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 MEFVO15553 781 aaPredicted RBP3.91□□□□□ -1.78
VPS41-206ENST00000418457 DLX3O60479 287 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 PLS3P13797 630 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 L1CAMP32004 1257 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 IRAK1P51617 712 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 ERVFC1P60507 584 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 TMEM67Q5HYA8 995 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 FAM209AQ5JX71 171 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 SLC35F1Q5T1Q4 408 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 FOXB2Q5VYV0 432 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 E4F1Q66K89 784 aaPredicted RBP3.91□□□□□ -1.78
VPS41-206ENST00000418457 ATG4DQ86TL0 474 aaPredicted RBP3.91□□□□□ -1.78
VPS41-206ENST00000418457 SLCO6A1Q86UG4 719 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 CPNE8Q86YQ8 564 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 JAMLQ86YT9 394 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 SCUBE1Q8IWY4 988 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 PPIL6Q8IXY8 311 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 LILRA2Q8N149 483 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 KREMEN2Q8NCW0 462 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 NPLOC4Q8TAT6 608 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 SH3TC2Q8TF17 1288 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 MYLIPQ8WY64 445 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 OSBP2Q969R2 916 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 C1orf159Q96HA4 380 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 JMJD8Q96S16 334 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 PTCH2Q9Y6C5 1203 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 TAF6LQ9Y6J9 622 aa3.91□□□□□ -1.78
VPS41-206ENST00000418457 CCDC163A0A0D9SF12 145 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 A0A1W2PQ27 194 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 A0A1W2PQ64 194 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 A0A1W2PQC6 194 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 A0A1W2PQD8 194 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 WTIPA6NIX2 430 aaPredicted RBP3.9□□□□□ -1.79
VPS41-206ENST00000418457 NRDCO43847 1150 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 CEBPAP49715 358 aaPredicted RBP3.9□□□□□ -1.79
VPS41-206ENST00000418457 SUMO1P63165 101 aaKnown RBP3.9□□□□□ -1.79
VPS41-206ENST00000418457 RBM10P98175 930 aaKnown RBP3.9□□□□□ -1.79
VPS41-206ENST00000418457 KCNAB2Q13303 367 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 HSF5Q4G112 596 aaPredicted RBP3.9□□□□□ -1.79
VPS41-206ENST00000418457 ACBD5Q5T8D3 534 aaPredicted RBP3.9□□□□□ -1.79
VPS41-206ENST00000418457 IQCEQ6IPM2 695 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 GALNT18Q6P9A2 607 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 GIMAP6Q6P9H5 292 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 USP53Q70EK8 1073 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 JAZF1Q86VZ6 243 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 ABHD4Q8TB40 342 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 DIO2Q92813 273 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 KIRREL1Q96J84 757 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 EXOC2Q96KP1 924 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 RNPC3Q96LT9 517 aaKnown RBP3.9□□□□□ -1.79
VPS41-206ENST00000418457 MMP19Q99542 508 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 DHRS4Q9BTZ2 278 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 C19orf44Q9H6X5 657 aa3.9□□□□□ -1.79
VPS41-206ENST00000418457 KANSL2Q9H9L4 492 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms