RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 SEPHS1P49903 392 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 SLC14A2Q15849 920 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 TKFCQ3LXA3 575 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 RALGPS1Q5JS13 557 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 KSR1Q8IVT5 923 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 ZCRB1Q8TBF4 217 aaKnown RBP6.63□□□□□ -1.35
VPS54-204ENST00000416400 TRAV20A0A0B4J274 112 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 CCDC163A0A0D9SF12 145 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 A0A1W2PQU0 124 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 GYS2P54840 703 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 CHRNEQ04844 493 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 HSP90AA2PQ14568 343 aaPredicted RBP6.62□□□□□ -1.35
VPS54-204ENST00000416400 ZNF227Q86WZ6 799 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 ANKS4BQ8N8V4 417 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 PDZD8Q8NEN9 1154 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 GPATCH3Q96I76 525 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 FCRL2Q96LA5 508 aaPredicted RBP6.62□□□□□ -1.35
VPS54-204ENST00000416400 IPO9Q96P70 1041 aaKnown RBP6.62□□□□□ -1.35
VPS54-204ENST00000416400 CDC6Q99741 560 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 AARSD1Q9BTE6 412 aaKnown RBP6.62□□□□□ -1.35
VPS54-204ENST00000416400 SLC12A9Q9BXP2 914 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 SPC25Q9HBM1 224 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 AP5S1Q9NUS5 200 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 IFT57Q9NWB7 429 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 ADAMTS6Q9UKP5 1117 aa6.62□□□□□ -1.35
VPS54-204ENST00000416400 GPR55Q9Y2T6 319 aaPredicted RBP6.62□□□□□ -1.35
VPS54-204ENST00000416400 hCG_2014768A0A024R1R8 64 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 A0A1W2PQ27 194 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 A0A1W2PQ64 194 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 A0A1W2PQC6 194 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 A0A1W2PQD8 194 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 FITM1A5D6W6 292 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 TBC1D8O95759 1140 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 ITGAVP06756 1048 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 CDK11BP21127 795 aaKnown RBP6.61□□□□□ -1.35
VPS54-204ENST00000416400 PPP2R2AP63151 447 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 JAMLQ86YT9 394 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 TRIM59Q8IWR1 403 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 FCRL3Q96P31 734 aaPredicted RBP6.61□□□□□ -1.35
VPS54-204ENST00000416400 ARHGEF4Q9NR80 690 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 TNFRSF10DQ9UBN6 386 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 PLAAQ9Y263 795 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 CD2APQ9Y5K6 639 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 BACE2Q9Y5Z0 518 aa6.61□□□□□ -1.35
VPS54-204ENST00000416400 TMEM82A0PJX8 343 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 C2orf71A6NGG8 1288 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 STXBP3O00186 592 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 ZGLP1P0C6A0 271 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 KIR2DL1P43626 348 aaPredicted RBP6.6□□□□□ -1.35
VPS54-204ENST00000416400 KIR2DL2P43627 348 aaPredicted RBP6.6□□□□□ -1.35
VPS54-204ENST00000416400 KCNJ6P48051 423 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 LCE3BQ5TA77 95 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 HLA-DQA1Q5Y7H0 255 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 EEF1DP3Q658K8 133 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 GTF2IRD2BQ6EKJ0 949 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 CYP2R1Q6VVX0 501 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 GTF2IRD2Q86UP8 949 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 ZNF513Q8N8E2 541 aaPredicted RBP6.6□□□□□ -1.35
VPS54-204ENST00000416400 MYLIPQ8WY64 445 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 MAP6Q96JE9 813 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 EXOC2Q96KP1 924 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 CCDC140Q96MF4 163 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 BRINP2Q9C0B6 783 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 CTNND2Q9UQB3 1225 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 COL4A3BPQ9Y5P4 624 aa6.6□□□□□ -1.35
VPS54-204ENST00000416400 TRBV23OR9-2A0A075B6M9 112 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 AURKAO14965 403 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 SNRPB2P08579 225 aaKnown RBP6.59□□□□□ -1.35
VPS54-204ENST00000416400 IFNGR1P15260 489 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 HOXC12P31275 282 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 L1CAMP32004 1257 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 IGBP1P78318 339 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 RBM10P98175 930 aaKnown RBP6.59□□□□□ -1.35
VPS54-204ENST00000416400 FOXB2Q5VYV0 432 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 ZPBP2Q6X784 338 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 CEP128Q6ZU80 1094 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 ATG4DQ86TL0 474 aaPredicted RBP6.59□□□□□ -1.35
VPS54-204ENST00000416400 BTN2A2Q8WVV5 523 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 MRGPRX3Q96LB0 322 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 CYP26B1Q9NR63 512 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 ADGRE2Q9UHX3 823 aa6.59□□□□□ -1.35
VPS54-204ENST00000416400 TRBV23-1A0A0A0MS06 115 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 ANAPC15P60006 121 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 SCRN1Q12765 414 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 DALRD3Q5D0E6 543 aaKnown RBP6.58□□□□□ -1.36
VPS54-204ENST00000416400 FAM209AQ5JX71 171 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 RTP2Q5QGT7 225 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 RCSD1Q6JBY9 416 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 LILRA2Q8N149 483 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 FLAD1Q8NFF5 587 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 ABHD4Q8TB40 342 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 LINC01599Q8WXQ3 324 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 KIRREL1Q96J84 757 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 PTCHD1Q96NR3 888 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 DHRS4Q9BTZ2 278 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 LGR4Q9BXB1 951 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 NKX2-4Q9H2Z4 354 aa6.58□□□□□ -1.36
VPS54-204ENST00000416400 NOP58Q9Y2X3 529 aaKnown RBP6.58□□□□□ -1.36
VPS54-204ENST00000416400 MRPS23Q9Y3D9 190 aaKnown RBP6.58□□□□□ -1.36
VPS54-204ENST00000416400 TAF6LQ9Y6J9 622 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms