RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 CCPG1Q9ULG6 757 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 TLL2Q9Y6L7 1015 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 CCL15-CCL14A0A0B4J2E2 113 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 GNA11P29992 359 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 MCM4P33991 863 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 CEBPZQ03701 1054 aaKnown RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 TMEM132BQ14DG7 1078 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 CCL15Q16663 113 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 GALNT17Q6IS24 598 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 USP17L6PQ6QN14 398 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 PIK3AP1Q6ZUJ8 805 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 FASTKD5Q7L8L6 764 aaKnown RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 REXO1Q8N1G1 1221 aaKnown RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 PGBD1Q96JS3 809 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 P2RX7Q99572 595 aaKnown RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 PSTPIP2Q9H939 334 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 BIN2Q9UBW5 565 aaPredicted RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 MYPNQ86TC9 1320 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 BTBD19C9JJ37 291 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 GTF2A2P52657 109 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 IRX3P78415 501 aaPredicted RBP11.09□□□□□ -0.63
RIF1-202ENST00000414861 JAKMIP3Q5VZ66 844 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 RGMBQ6NW40 437 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 CUL5Q93034 780 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 HOMER2Q9NSB8 354 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 ABT1Q9ULW3 272 aaKnown RBP11.09□□□□□ -0.63
RIF1-202ENST00000414861 TMEM88BA6NKF7 163 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 MEIS2O14770 477 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 ZBED4O75132 1171 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 CETPP11597 493 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 CLK2P49760 499 aaKnown RBP11.09□□□□□ -0.63
RIF1-202ENST00000414861 KRT85P78386 507 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 TBC1D5Q92609 795 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 PTPN18Q99952 460 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 HOXC10Q9NYD6 342 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 RIPK3Q9Y572 518 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 CLIC4Q9Y696 253 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 PCNTO95613 3336 aa11.09□□□□□ -0.63
RIF1-202ENST00000414861 NFIBO00712 420 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 SLC10A3P09131 477 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 ALAS1P13196 640 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 HERVK_113P62684 666 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 MUM1L1Q5H9M0 696 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 FAM43AQ8N2R8 423 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 CLEC4DQ8WXI8 215 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 BTBD7Q9P203 1132 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 ABCB11O95342 1321 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 LCTP09848 1927 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 FAM155AB1AL88 458 aaPredicted RBP11.08□□□□□ -0.64
RIF1-202ENST00000414861 FDX1P10109 184 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 CYP2C8P10632 490 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 ATP2B1P20020 1258 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 HOXA13P31271 388 aaPredicted RBP11.08□□□□□ -0.64
RIF1-202ENST00000414861 FSTL1Q12841 308 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 INF2Q27J81 1249 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 SNRNP48Q6IEG0 339 aaKnown RBP11.08□□□□□ -0.64
RIF1-202ENST00000414861 LBX2Q6XYB7 198 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 BICD2Q8TD16 824 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 TXNRD2Q9NNW7 524 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 CTDP1Q9Y5B0 961 aaPredicted RBP11.08□□□□□ -0.64
RIF1-202ENST00000414861 PCDHB6Q9Y5E3 794 aa11.08□□□□□ -0.64
RIF1-202ENST00000414861 CCDC194A0A1B0GVG4 234 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 PDHXO00330 501 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 CNMDO75829 334 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 MRPL12P52815 198 aaKnown RBP11.07□□□□□ -0.64
RIF1-202ENST00000414861 OAZ1P54368 228 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 LEO1Q8WVC0 666 aaPredicted RBP11.07□□□□□ -0.64
RIF1-202ENST00000414861 MRPL11Q9Y3B7 192 aaKnown RBP11.07□□□□□ -0.64
RIF1-202ENST00000414861 ATP2A1O14983 1001 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 EDIL3O43854 480 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 CFBP00751 764 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 PLS1Q14651 629 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 SF3A1Q15459 793 aaKnown RBP11.07□□□□□ -0.64
RIF1-202ENST00000414861 RILPL1Q5EBL4 403 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 ANO1Q5XXA6 986 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 KRT25Q7Z3Z0 450 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 ZNF396Q96N95 335 aaPredicted RBP11.07□□□□□ -0.64
RIF1-202ENST00000414861 PAGR1Q9BTK6 254 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 TEX13BQ9BXU2 312 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 POLR3EQ9NVU0 708 aa11.07□□□□□ -0.64
RIF1-202ENST00000414861 NASPP49321 788 aaPredicted RBP11.06□□□□□ -0.64
RIF1-202ENST00000414861 PABPC4Q13310 644 aaKnown RBP eCLIP11.06□□□□□ -0.64
RIF1-202ENST00000414861 ANKRD23Q86SG2 305 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 TMEM87AQ8NBN3 555 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 TRERF1Q96PN7 1200 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 ZIC5Q96T25 663 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 R3HDMLQ9H3Y0 253 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 RNF146Q9NTX7 359 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 LMBRD1Q9NUN5 540 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 RTEL1Q9NZ71 1219 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 TESPA1A2RU30 521 aaPredicted RBP11.06□□□□□ -0.64
RIF1-202ENST00000414861 PIK3CDO00329 1044 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 IGF2BP3O00425 579 aaKnown RBP eCLIP11.06□□□□□ -0.64
RIF1-202ENST00000414861 PRPF40AO75400 957 aaKnown RBP11.06□□□□□ -0.64
RIF1-202ENST00000414861 OSBPP22059 807 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 TRAF1Q13077 416 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 NONOQ15233 471 aaKnown RBP eCLIP11.06□□□□□ -0.64
RIF1-202ENST00000414861 PTPAQ15257 358 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 MB21D1Q8N884 522 aa11.06□□□□□ -0.64
RIF1-202ENST00000414861 LINC00301Q8NCQ3 95 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms