RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 S100A5P33763 92 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 DMTNQ08495 405 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 THEMISQ8N1K5 641 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 RAPGEF5Q92565 580 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 DEXIO95424 95 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 C1orf112Q9NSG2 853 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 SUGT1Q9Y2Z0 365 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 CAB39Q9Y376 341 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 MSH2P43246 934 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 BBS5Q8N3I7 341 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 PPHLN1Q8NEY8 458 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 ZBTB3Q9H5J0 574 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 CUTAO60888 179 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 TRIM33Q9UPN9 1127 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 HSPA6P17066 643 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 PMLP29590 882 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 B4GALNT2Q8NHY0 566 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 GINS4Q9BRT9 223 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 SNX19Q92543 992 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 TCEANC2Q96MN5 208 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 TTC41PQ6P2S7 1318 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 DEAF1O75398 565 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 CHGBP05060 677 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 USP26Q9BXU7 913 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 FAM207AQ9NSI2 230 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 FIS1Q9Y3D6 152 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 JRKLQ9Y4A0 524 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 TMEM191CA6NGB0 347 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 TMEM191BP0C7N4 346 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 TEDDM1Q5T9Z0 273 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 DHX32Q7L7V1 743 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 GEMIN8Q9NWZ8 242 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 ZMYND8Q9ULU4 1186 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 IFNAR2P48551 515 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 KRT33BQ14525 404 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 KCTD16Q68DU8 428 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 SUN2Q9UH99 717 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 SBNO2Q9Y2G9 1366 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 ACTN1P12814 892 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 SCG2P13521 617 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 CYTH2Q99418 400 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 TRIM67Q6ZTA4 783 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 CDC26Q8NHZ8 85 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 JPH4Q96JJ6 628 aa14.47□□□□□ -0.09
CCDC88A-204ENST00000413716 CFLARO15519 480 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 ZNF202O95125 648 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 ANGPT1Q15389 498 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 NBPF14Q5TI25 921 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 DCDC2Q9UHG0 476 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 RASSF10A6NK89 507 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 AK2P54819 239 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 ANO1Q5XXA6 986 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 ASPSCR1Q9BZE9 553 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 EIF3DO15371 548 aaKnown RBP eCLIP14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 TCF3P15923 654 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 PTK2BQ14289 1009 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 SMCO2A6NFE2 343 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 THUMPD2Q9BTF0 503 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 DNAJC6O75061 913 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 AP2B1P63010 937 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 TMED2Q15363 201 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 SPOPLQ6IQ16 392 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 CHST3Q7LGC8 479 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 LUZP2Q86TE4 346 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 TLK2Q86UE8 772 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 SETDB2Q96T68 719 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 TLK1Q9UKI8 766 aa14.46□□□□□ -0.09
CCDC88A-204ENST00000413716 VCAM1P19320 739 aa14.46□□□□□ -0.1
CCDC88A-204ENST00000413716 HERC4Q5GLZ8 1057 aaPredicted RBP14.46□□□□□ -0.1
CCDC88A-204ENST00000413716 DEPDC1BQ8WUY9 529 aa14.46□□□□□ -0.1
CCDC88A-204ENST00000413716 MAEAQ7L5Y9 396 aa14.46□□□□□ -0.1
CCDC88A-204ENST00000413716 ARHGEF1Q92888 912 aaKnown RBP14.46□□□□□ -0.1
CCDC88A-204ENST00000413716 ATG3Q9NT62 314 aa14.46□□□□□ -0.1
CCDC88A-204ENST00000413716 PDHA1P08559 390 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ESRRAP11474 423 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 FRA10AC1Q70Z53 315 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ARHGAP18Q8N392 663 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 CTNND1O60716 968 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 OTUD6AQ7L8S5 288 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 TAB2Q9NYJ8 693 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 TTC21BQ7Z4L5 1316 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 hCG_2014768A0A024R1R8 64 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 TNNC2P02585 160 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 TMED10P49755 219 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ALS2CLQ60I27 953 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 CREB3L3Q68CJ9 461 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ARMC2Q8NEN0 867 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 NUDCD1Q96RS6 583 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 LMCD1Q9NZU5 365 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 PPARGP37231 505 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 NR5A1Q13285 461 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 CATSPER3Q86XQ3 398 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 LLPHQ9BRT6 129 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 CCDC90BQ9GZT6 254 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ZNF148Q9UQR1 794 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 CERS3Q8IU89 383 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 LRRC9Q6ZRR7 1453 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 H7C0C1 242 aa14.45□□□□□ -0.1
CCDC88A-204ENST00000413716 ATP5HO75947 161 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms