RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 RBAK-RBAKDNI3L0D1 243 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 CES2O00748 559 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 PRKAB2O43741 272 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 RNF40O75150 1001 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 TCP1P17987 556 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 PPFIA1Q13136 1202 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 RNF10Q8N5U6 811 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 IPO4Q8TEX9 1081 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 ATRIPQ8WXE1 791 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 SYN2Q92777 582 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 SLC4A9Q96Q91 983 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 SLF1Q9BQI6 1058 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 FAM204AQ9H8W3 233 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 EXOC1Q9NV70 894 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 V9GY48 417 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 QSER1Q2KHR3 1735 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 TAF1P21675 1872 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 FLT1P17948 1338 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 AHDC1Q5TGY3 1603 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 A0A087WUV0 522 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 WNT7AO00755 349 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 NTSR2O95665 410 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 CYP7A1P22680 504 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 IGHMBP2P38935 993 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 STX17P56962 302 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 SF3B3Q15393 1217 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 PTPN21Q16825 1174 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 DNAJC21Q5F1R6 531 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 KLHL10Q6JEL2 608 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 DZIP3Q86Y13 1208 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 CD302Q8IX05 232 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 BLIDQ8IZY5 108 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 SYNE4Q8N205 404 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 SRBD1Q8N5C6 995 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 NUP133Q8WUM0 1156 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 CCDC47Q96A33 483 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 JAKMIP2Q96AA8 810 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 CHP1Q99653 195 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 TAB2Q9NYJ8 693 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 SNX12Q9UMY4 172 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 MYH4Q9Y623 1939 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 SSU72P8A0A1W2PR75 194 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 RASSF10A6NK89 507 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 NUTM2BA6NNL0 878 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 NUTM2EB1AL46 878 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 AGPSO00116 658 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 OPA1O60313 960 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 N4BP1O75113 896 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 PLEKHA8P1O95397 391 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 ATP1A1P05023 1023 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 CCT6AP40227 531 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 STAT6P42226 847 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 GRM4Q14833 912 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 HSP90AA4PQ58FG1 418 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 CCDC122Q5T0U0 273 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 SWT1Q5T5J6 900 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 CERS3Q8IU89 383 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 CPLX3Q8WVH0 158 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 MMS19Q96T76 1030 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 DUSP9Q99956 384 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 NUCKS1Q9H1E3 243 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 VPS16Q9H269 839 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 LRP2BPQ9P2M1 347 aa6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 MAGEC2Q9UBF1 373 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-203ENST00000412148 PVALEFA0A1B0GWK0 134 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 hCG_1984214I3L0E3 225 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 IPO7O95373 1038 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 FGFR1OPO95684 399 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 ABL1P00519 1130 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 RHOXF2BP0C7M4 288 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 EPHB4P54760 987 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 CHRNDQ07001 517 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 ZNF174Q15697 407 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 RRP12Q5JTH9 1297 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 MIIPQ5JXC2 388 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 NCAPH2Q6IBW4 605 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 CENPPQ6IPU0 288 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 RCSD1Q6JBY9 416 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 CLEC4GQ6UXB4 293 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 YTHDF3Q7Z739 585 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 ADGRA1Q86SQ6 560 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 CCDC84Q86UT8 332 aaPredicted RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 CREG2Q8IUH2 290 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 ZNF713Q8N859 430 aaPredicted RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 C3orf20Q8ND61 904 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 P2RX5Q93086 422 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 RHOXF2Q9BQY4 288 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 ZKSCAN3Q9BRR0 538 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 SELENOOQ9BVL4 669 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 CDCA7Q9BWT1 371 aaPredicted RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 SH2D4AQ9H788 454 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 NHEJ1Q9H9Q4 299 aaPredicted RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 LCMT1Q9UIC8 334 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 ZBTB1Q9Y2K1 713 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 LOXHD1Q8IVV2 1947 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 ESYT2A0FGR8 921 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 GRID2IPA4D2P6 1211 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 BTNL10A8MVZ5 291 aa6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 USO1O60763 962 aaKnown RBP6.4□□□□□ -1.38
CCDC88A-203ENST00000412148 CAMTA2O94983 1202 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms