RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SAMD1Q6SPF0 538 aaPredicted RBP16.02■□□□□ 0.16
GPNMB-203ENST00000409458 NEK8Q86SG6 692 aa16.02■□□□□ 0.16
GPNMB-203ENST00000409458 CKAP2LQ8IYA6 745 aa16.02■□□□□ 0.16
GPNMB-203ENST00000409458 ZNF280CQ8ND82 737 aa16.02■□□□□ 0.16
GPNMB-203ENST00000409458 TSPY26PQ9H489 355 aa16.02■□□□□ 0.16
GPNMB-203ENST00000409458 TAF1DQ9H5J8 278 aaPredicted RBP16.02■□□□□ 0.16
GPNMB-203ENST00000409458 GRPEL1Q9HAV7 217 aa16.02■□□□□ 0.16
GPNMB-203ENST00000409458 EMILIN3Q9NT22 766 aa16.02■□□□□ 0.16
GPNMB-203ENST00000409458 MYH7BA7E2Y1 1941 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 SMCHD1A6NHR9 2005 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 POTECB2RU33 542 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 ZNF202O95125 648 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 USP14P54578 494 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 LETM2Q2VYF4 491 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 ZC3H15Q8WU90 426 aaKnown RBP16.02■□□□□ 0.15
GPNMB-203ENST00000409458 FERMT2Q96AC1 680 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 SNCAIPQ9Y6H5 919 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 ZHX2Q9Y6X8 837 aa16.02■□□□□ 0.15
GPNMB-203ENST00000409458 IQCA1LA6NCM1 817 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L15C9J2P7 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L13C9JLJ4 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L11C9JVI0 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L18D6R9N7 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L22D6RA61 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L17D6RBQ6 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L19D6RCP7 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L20D6RJB6 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 OPLAHO14841 1288 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 SYKP43405 635 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 BACE1P56817 501 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L24Q0WX57 530 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 IL17AQ16552 155 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 EAPPQ56P03 285 aaPredicted RBP16.01■□□□□ 0.15
GPNMB-203ENST00000409458 L1TD1Q5T7N2 865 aaKnown RBP16.01■□□□□ 0.15
GPNMB-203ENST00000409458 USP17L6PQ6QN14 398 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 CDCA5Q96FF9 252 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 GLT8D2Q9H1C3 349 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 RBSNQ9H1K0 784 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 TMEM60Q9H2L4 133 aa16.01■□□□□ 0.15
GPNMB-203ENST00000409458 VWA3AA6NCI4 1184 aa16■□□□□ 0.15
GPNMB-203ENST00000409458 MEIS2O14770 477 aa16■□□□□ 0.15
GPNMB-203ENST00000409458 EDIL3O43854 480 aa16■□□□□ 0.15
GPNMB-203ENST00000409458 CCNT1O60563 726 aaKnown RBP16■□□□□ 0.15
GPNMB-203ENST00000409458 VGLL4Q14135 290 aa16■□□□□ 0.15
GPNMB-203ENST00000409458 PPP1R3FQ6ZSY5 799 aaPredicted RBP16■□□□□ 0.15
GPNMB-203ENST00000409458 USP49Q70CQ1 688 aa16■□□□□ 0.15
GPNMB-203ENST00000409458 SLF1Q9BQI6 1058 aa16■□□□□ 0.15
GPNMB-203ENST00000409458 TANGO6Q9C0B7 1094 aa16■□□□□ 0.15
GPNMB-203ENST00000409458 RPAP3Q9H6T3 665 aaPredicted RBP16■□□□□ 0.15
GPNMB-203ENST00000409458 KCNH3Q9ULD8 1083 aa16■□□□□ 0.15
GPNMB-203ENST00000409458 CTAGE5O15320 804 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 MRE11P49959 708 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 ARL6IP4Q66PJ3 421 aaKnown RBP15.99■□□□□ 0.15
GPNMB-203ENST00000409458 C12orf42Q96LP6 360 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 P2RX7Q99572 595 aaKnown RBP15.99■□□□□ 0.15
GPNMB-203ENST00000409458 FAM13BQ9NYF5 915 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 PTPRFP10586 1907 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 RLFQ13129 1914 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.99■□□□□ 0.15
GPNMB-203ENST00000409458 HMGCS2P54868 508 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 MAP3K9P80192 1104 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 SYMPKQ92797 1274 aaKnown RBP15.99■□□□□ 0.15
GPNMB-203ENST00000409458 ANO3Q9BYT9 981 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 AFG3L2Q9Y4W6 797 aa15.99■□□□□ 0.15
GPNMB-203ENST00000409458 PPP1R12BO60237 982 aaPredicted RBP15.98■□□□□ 0.15
GPNMB-203ENST00000409458 NEMFO60524 1076 aa15.98■□□□□ 0.15
GPNMB-203ENST00000409458 FLOT1O75955 427 aa15.98■□□□□ 0.15
GPNMB-203ENST00000409458 TDP2O95551 362 aa15.98■□□□□ 0.15
GPNMB-203ENST00000409458 XRCC6P12956 609 aaKnown RBP eCLIP15.98■□□□□ 0.15
GPNMB-203ENST00000409458 TYRO3Q06418 890 aa15.98■□□□□ 0.15
GPNMB-203ENST00000409458 ORC2Q13416 577 aaPredicted RBP15.98■□□□□ 0.15
GPNMB-203ENST00000409458 PRPF38AQ8NAV1 312 aaKnown RBP15.98■□□□□ 0.15
GPNMB-203ENST00000409458 ERCC4Q92889 916 aaPredicted RBP15.98■□□□□ 0.15
GPNMB-203ENST00000409458 EPSTI1Q96J88 318 aa15.98■□□□□ 0.15
GPNMB-203ENST00000409458 TIGD1Q96MW7 591 aa15.98■□□□□ 0.15
GPNMB-203ENST00000409458 PPP1R9AQ9ULJ8 1098 aa15.98■□□□□ 0.15
GPNMB-203ENST00000409458 ZNF536O15090 1300 aa15.98■□□□□ 0.15
GPNMB-203ENST00000409458 RBBP6Q7Z6E9 1792 aaKnown RBP15.97■□□□□ 0.15
GPNMB-203ENST00000409458 A0A087X0B3 334 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 LAD1O00515 517 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 SLC37A4O43826 429 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 OR52Z1P0C646 297 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 CCDC192P0DO97 292 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 IREB2P48200 963 aaKnown RBP15.97■□□□□ 0.15
GPNMB-203ENST00000409458 TRAF1Q13077 416 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 AP3B2Q13367 1082 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 LDHDQ86WU2 507 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 SDF4Q9BRK5 362 aa15.97■□□□□ 0.15
GPNMB-203ENST00000409458 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.97■□□□□ 0.15
GPNMB-203ENST00000409458 C19orf81C9J6K1 198 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 ICAM1P05362 532 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 POTEIP0CG38 1075 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 POTEJP0CG39 1038 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 HOXA13P31271 388 aaPredicted RBP15.96■□□□□ 0.15
GPNMB-203ENST00000409458 NF2P35240 595 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 PRPHP41219 470 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 LONRF3Q496Y0 759 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 MOB2Q70IA6 237 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 RNF214Q8ND24 703 aa15.96■□□□□ 0.15
GPNMB-203ENST00000409458 CNKSR2Q8WXI2 1034 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms