RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ATG16L1Q676U5 607 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 NCAPH2Q6IBW4 605 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PDXDC1Q6P996 788 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 APLFQ8IW19 511 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 KLHL7Q8IXQ5 586 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ZNF654Q8IZM8 581 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ENOX1Q8TC92 643 aaKnown RBP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TTC25Q96NG3 672 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 TEKT3Q9BXF9 490 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 PPCSQ9HAB8 311 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 ABCA5Q8WWZ7 1642 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 WDR19Q8NEZ3 1342 aa6.66□□□□□ -1.34
SCN1A-203ENST00000409050 SYCP2Q9BX26 1530 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 PLEKHG3A1L390 1219 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 PGRMC1O00264 195 aaKnown RBP6.65□□□□□ -1.34
SCN1A-203ENST00000409050 DCTN3O75935 186 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 KRT81Q14533 505 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 MAN2A1Q16706 1144 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 KMT5BQ4FZB7 885 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 C2CD5Q86YS7 1000 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 FAM212AQ96EL1 285 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 SLC52A2Q9HAB3 445 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 INTS9Q9NV88 658 aaKnown RBP6.65□□□□□ -1.34
SCN1A-203ENST00000409050 MIF4GDA9UHW6 222 aaKnown RBP6.65□□□□□ -1.34
SCN1A-203ENST00000409050 PODXLO00592 558 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 PPP1R12AO14974 1030 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-203ENST00000409050 GPC4O75487 556 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 BFSP1Q12934 665 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 DRP2Q13474 957 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 SLC39A14Q15043 492 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 FAM26FQ5R3K3 315 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 ARL6IP4Q66PJ3 421 aaKnown RBP6.65□□□□□ -1.34
SCN1A-203ENST00000409050 TMTC3Q6ZXV5 915 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 NFATC2IPQ8NCF5 419 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 MICAL1Q8TDZ2 1067 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 RABEP2Q9H5N1 569 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 GAS7O60861 476 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 GCP02774 474 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 SCG2P13521 617 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 RFX1P22670 979 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 NSFP46459 744 aaKnown RBP6.65□□□□□ -1.34
SCN1A-203ENST00000409050 PPARAQ07869 468 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 NBPF20Q3BBV1 942 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 TSHZ3Q63HK5 1081 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 GIPC2Q8TF65 315 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 TCEANC2Q96MN5 208 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 RIPOR2Q9Y4F9 1068 aa6.65□□□□□ -1.34
SCN1A-203ENST00000409050 NUP153P49790 1475 aaKnown RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 WDR62O43379 1518 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 RASGRF2O14827 1237 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 INHBAP08476 426 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 COPB1P53618 953 aaKnown RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 SARM1Q6SZW1 724 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 RHOT2Q8IXI1 618 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 HELBQ8NG08 1087 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 U2AF1L4Q8WU68 220 aaKnown RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 DHX38Q92620 1227 aaKnown RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 ZSCAN10Q96SZ4 725 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 CENPKQ9BS16 269 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 BIN2Q9UBW5 565 aaPredicted RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 TXNDC9O14530 226 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 RPN1P04843 607 aaKnown RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 YARSP54577 528 aaKnown RBP6.65□□□□□ -1.35
SCN1A-203ENST00000409050 ODR4Q5SWX8 454 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 PCGF5Q86SE9 256 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 CFAP61Q8NHU2 1237 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 NT5C1BQ96P26 610 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 PSMD1Q99460 953 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 EDEM3Q9BZQ6 932 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 CCDC87Q9NVE4 849 aa6.65□□□□□ -1.35
SCN1A-203ENST00000409050 CARMIL3Q8ND23 1372 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 CFAP74Q9C0B2 1584 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 KCNK3O14649 394 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 TMOD1P28289 359 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 INPP1P49441 399 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 ZBED6P86452 979 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 LRRC63Q05C16 580 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 CUL4AQ13619 759 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 ARHGEF6Q15052 776 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 TTC13Q8NBP0 860 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 ATP6V0A1Q93050 837 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 COPRSQ9NQ92 184 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 SH3GLB2Q9NR46 395 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 SERTAD1Q9UHV2 236 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 RWDD2AQ9UIY3 292 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 MTMR6Q9Y217 621 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 ACTN1P12814 892 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 CD19P15391 556 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 DMTNQ08495 405 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 MKRN3Q13064 507 aaKnown RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 RASIP1Q5U651 963 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 TYW1BQ6NUM6 668 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 GPBP1Q86WP2 473 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 FANCBQ8NB91 859 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 DTNBP1Q96EV8 351 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 BPIFA3Q9BQP9 254 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 NSFL1CQ9UNZ2 370 aaKnown RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 SCINQ9Y6U3 715 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 KIAA0556O60303 1618 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms