RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 PCDHA5Q9Y5H7 936 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 MRVI1Q9Y6F6 885 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 CETN3O15182 167 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 KIF5CO60282 957 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 SKILP12757 684 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 ADGRF4Q8IZF3 695 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 ZNF577Q9BSK1 485 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 MRPL44Q9H9J2 332 aaKnown RBP10.16□□□□□ -0.78
LIG4-202ENST00000405925 ARGLU1Q9NWB6 273 aaPredicted RBP10.16□□□□□ -0.78
LIG4-202ENST00000405925 KIAA1024Q9UPX6 916 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 LMO7Q8WWI1 1683 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 USO1O60763 962 aaKnown RBP10.15□□□□□ -0.78
LIG4-202ENST00000405925 KCNQ5Q9NR82 932 aa10.15□□□□□ -0.78
LIG4-202ENST00000405925 TBC1D8BQ0IIM8 1120 aa10.15□□□□□ -0.78
LIG4-202ENST00000405925 XKR9Q5GH70 373 aa10.15□□□□□ -0.78
LIG4-202ENST00000405925 C9orf131Q5VYM1 1079 aa10.15□□□□□ -0.78
LIG4-202ENST00000405925 PRPF38AQ8NAV1 312 aaKnown RBP10.15□□□□□ -0.78
LIG4-202ENST00000405925 TAF4BQ92750 862 aa10.15□□□□□ -0.78
LIG4-202ENST00000405925 IMPG2Q9BZV3 1241 aa10.15□□□□□ -0.78
LIG4-202ENST00000405925 FAM205AQ6ZU69 1335 aa10.15□□□□□ -0.78
LIG4-202ENST00000405925 RIC1Q4ADV7 1423 aa10.15□□□□□ -0.78
LIG4-202ENST00000405925 LAD1O00515 517 aa10.15□□□□□ -0.79
LIG4-202ENST00000405925 NOC4LQ9BVI4 516 aaKnown RBP10.15□□□□□ -0.79
LIG4-202ENST00000405925 ADD3Q9UEY8 706 aaKnown RBP10.15□□□□□ -0.79
LIG4-202ENST00000405925 HACL1Q9UJ83 578 aa10.15□□□□□ -0.79
LIG4-202ENST00000405925 FRMD4BQ9Y2L6 1034 aa10.15□□□□□ -0.79
LIG4-202ENST00000405925 TCRBV5S4A2TA0A5A2 114 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 SPDYE2BA6NHP3 402 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 SPDYE6P0CI01 402 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 ZNF543Q08ER8 600 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 MTMR2Q13614 643 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 SNRNP48Q6IEG0 339 aaKnown RBP10.14□□□□□ -0.79
LIG4-202ENST00000405925 SEPT14Q6ZU15 432 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 CD2APQ9Y5K6 639 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 A0A087WWV3 80 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 ONECUT3O60422 494 aaPredicted RBP10.14□□□□□ -0.79
LIG4-202ENST00000405925 URI1O94763 535 aaPredicted RBP10.14□□□□□ -0.79
LIG4-202ENST00000405925 EPB41P11171 864 aaKnown RBP10.14□□□□□ -0.79
LIG4-202ENST00000405925 NBPF9Q3BBW0 867 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 CRY2Q49AN0 593 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 RNF207Q6ZRF8 634 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 NELFBQ8WX92 580 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 EEF2KMTQ96G04 330 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 EPSTI1Q96J88 318 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 SH3GLB2Q9NR46 395 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 BARHL2Q9NY43 387 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 ANAPC4Q9UJX5 808 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 FEM1BQ9UK73 627 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 DLG5Q8TDM6 1919 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 CNGA1P29973 690 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 NOP2P46087 812 aaKnown RBP10.14□□□□□ -0.79
LIG4-202ENST00000405925 FANCCQ00597 558 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 OTUD6AQ7L8S5 288 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 GRAMD1CQ8IYS0 662 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 NEK11Q8NG66 645 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 RNF146Q9NTX7 359 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 TMEM260Q9NX78 707 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 TRPC6Q9Y210 931 aa10.14□□□□□ -0.79
LIG4-202ENST00000405925 GTPBP6O43824 516 aaPredicted RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 GPS2Q13227 327 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 DACT2Q5SW24 774 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 UTP14CQ5TAP6 766 aaKnown RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 DHX37Q8IY37 1157 aaKnown RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 ELP3Q9H9T3 547 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 HOXC10Q9NYD6 342 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 TAB2Q9NYJ8 693 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 NYAP2Q9P242 653 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 PNMA3Q9UL41 463 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 ZDHHC9Q9Y397 364 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 KIF2AO00139 706 aaPredicted RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 TNNT1P13805 278 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 STRN3Q13033 797 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 BIRC3Q13489 604 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 GRIK5Q16478 980 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 KIF18AQ8NI77 898 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 AK8Q96MA6 479 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 FNBP1Q96RU3 617 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 WDR11Q9BZH6 1224 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 DNAI2Q9GZS0 605 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 SUGCTQ9HAC7 445 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 PCDHA6Q9UN73 950 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 LUC7L2Q9Y383 392 aaKnown RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 PCDHA8Q9Y5H6 950 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 SRPRBQ9Y5M8 271 aaKnown RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 PARP4Q9UKK3 1724 aaKnown RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 EXOC3O60645 756 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 PDHBP11177 359 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 TBC1D5Q92609 795 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 LARP4BQ92615 738 aaKnown RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 RMDN3Q96TC7 470 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 SPZ1Q9BXG8 430 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 FHDC1Q9C0D6 1143 aaPredicted RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 RPAP3Q9H6T3 665 aaPredicted RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 SLC39A2Q9NP94 309 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 RABGAP1Q9Y3P9 1069 aa10.13□□□□□ -0.79
LIG4-202ENST00000405925 PDS5AQ29RF7 1337 aaKnown RBP10.13□□□□□ -0.79
LIG4-202ENST00000405925 DDTLA6NHG4 134 aaPredicted RBP10.12□□□□□ -0.79
LIG4-202ENST00000405925 MEIS1O00470 390 aa10.12□□□□□ -0.79
LIG4-202ENST00000405925 DDNO94850 711 aaPredicted RBP10.12□□□□□ -0.79
LIG4-202ENST00000405925 DESP17661 470 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 219.9 ms