RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 KCTD1Q719H9 257 aa33.71■■■□□ 2.99
HMGB1-205ENST00000399494 TRERF1Q96PN7 1200 aa33.71■■■□□ 2.99
HMGB1-205ENST00000399494 BUD13Q9BRD0 619 aaKnown RBP eCLIP33.71■■■□□ 2.996e-8■□□□□ 10.3
HMGB1-205ENST00000399494 TNFAIP2Q03169 654 aa33.7■■■□□ 2.99
HMGB1-205ENST00000399494 STX8Q9UNK0 236 aa33.7■■■□□ 2.99
HMGB1-205ENST00000399494 ASB14A6NK59 587 aa33.69■■■□□ 2.98
HMGB1-205ENST00000399494 TSPY2A6NKD2 308 aa33.69■■■□□ 2.98
HMGB1-205ENST00000399494 NMT2O60551 498 aa33.69■■■□□ 2.98
HMGB1-205ENST00000399494 OSBPL3Q9H4L5 887 aa33.69■■■□□ 2.98
HMGB1-205ENST00000399494 ASTN1O14525 1302 aa33.69■■■□□ 2.98
HMGB1-205ENST00000399494 ALAS1P13196 640 aa33.68■■■□□ 2.98
HMGB1-205ENST00000399494 SNAP25P60880 206 aa33.68■■■□□ 2.98
HMGB1-205ENST00000399494 BEX3Q00994 111 aa33.68■■■□□ 2.98
HMGB1-205ENST00000399494 FAM126BQ8IXS8 530 aa33.68■■■□□ 2.98
HMGB1-205ENST00000399494 GNEQ9Y223 722 aaKnown RBP33.68■■■□□ 2.98
HMGB1-205ENST00000399494 FOSL2P15408 326 aa33.67■■■□□ 2.98
HMGB1-205ENST00000399494 PPIGQ13427 754 aaKnown RBP eCLIP33.67■■■□□ 2.98
HMGB1-205ENST00000399494 TMEM240Q5SV17 173 aa33.67■■■□□ 2.98
HMGB1-205ENST00000399494 RILPL2Q969X0 211 aa33.67■■■□□ 2.98
HMGB1-205ENST00000399494 ANAPC4Q9UJX5 808 aa33.67■■■□□ 2.98
HMGB1-205ENST00000399494 PRR12Q9ULL5 1215 aa33.67■■■□□ 2.98
HMGB1-205ENST00000399494 CDH23Q9H251 3354 aa33.66■■■□□ 2.98
HMGB1-205ENST00000399494 DNAJB2P25686 324 aa33.66■■■□□ 2.98
HMGB1-205ENST00000399494 NOVP48745 357 aa33.66■■■□□ 2.98
HMGB1-205ENST00000399494 GRIN2CQ14957 1233 aa33.66■■■□□ 2.98
HMGB1-205ENST00000399494 MUM1L1Q5H9M0 696 aa33.66■■■□□ 2.98
HMGB1-205ENST00000399494 CCDC174Q6PII3 467 aa33.66■■■□□ 2.98
HMGB1-205ENST00000399494 CD4P01730 458 aa33.65■■■□□ 2.98
HMGB1-205ENST00000399494 CSF2RAP15509 400 aa33.65■■■□□ 2.98
HMGB1-205ENST00000399494 RASIP1Q5U651 963 aa33.65■■■□□ 2.98
HMGB1-205ENST00000399494 VPS53Q5VIR6 699 aa33.65■■■□□ 2.98
HMGB1-205ENST00000399494 NOL8Q76FK4 1167 aaKnown RBP33.65■■■□□ 2.98
HMGB1-205ENST00000399494 RASGRP2Q7LDG7 609 aa33.65■■■□□ 2.98
HMGB1-205ENST00000399494 TMEM199Q8N511 208 aa33.65■■■□□ 2.98
HMGB1-205ENST00000399494 SLC43A3Q8NBI5 491 aa33.65■■■□□ 2.98
HMGB1-205ENST00000399494 CYP39A1Q9NYL5 469 aa33.65■■■□□ 2.98
HMGB1-205ENST00000399494 DDX49Q9Y6V7 483 aaKnown RBP33.65■■■□□ 2.98
HMGB1-205ENST00000399494 TLR3O15455 904 aaKnown RBP33.64■■■□□ 2.98
HMGB1-205ENST00000399494 PRUNE2Q8WUY3 3088 aa33.64■■■□□ 2.97
HMGB1-205ENST00000399494 RANBP6O60518 1105 aaKnown RBP33.63■■■□□ 2.97
HMGB1-205ENST00000399494 FGRP09769 529 aa33.63■■■□□ 2.97
HMGB1-205ENST00000399494 PDE4AP27815 886 aa33.63■■■□□ 2.97
HMGB1-205ENST00000399494 ALX1Q15699 326 aa33.63■■■□□ 2.97
HMGB1-205ENST00000399494 TAPT1Q6NXT6 567 aa33.63■■■□□ 2.97
HMGB1-205ENST00000399494 CXCL17Q6UXB2 119 aa33.63■■■□□ 2.97
HMGB1-205ENST00000399494 PPP1R12CQ9BZL4 782 aa33.63■■■□□ 2.97
HMGB1-205ENST00000399494 PDGFCQ9NRA1 345 aa33.63■■■□□ 2.97
HMGB1-205ENST00000399494 ORC4O43929 436 aa33.62■■■□□ 2.97
HMGB1-205ENST00000399494 SMPD1P17405 629 aa33.62■■■□□ 2.97
HMGB1-205ENST00000399494 IQSEC1Q6DN90 963 aa33.62■■■□□ 2.97
HMGB1-205ENST00000399494 TLK2Q86UE8 772 aa33.62■■■□□ 2.97
HMGB1-205ENST00000399494 ZNF576Q9H609 170 aa33.62■■■□□ 2.97
HMGB1-205ENST00000399494 DYNC1LI2O43237 492 aaPredicted RBP33.61■■■□□ 2.97
HMGB1-205ENST00000399494 CABYRO75952 493 aa33.61■■■□□ 2.97
HMGB1-205ENST00000399494 PTGS1P23219 599 aa33.61■■■□□ 2.97
HMGB1-205ENST00000399494 FSCN1Q16658 493 aaKnown RBP33.61■■■□□ 2.97
HMGB1-205ENST00000399494 ZNF365Q70YC5 407 aa33.61■■■□□ 2.97
HMGB1-205ENST00000399494 AP5M1Q9H0R1 490 aa33.61■■■□□ 2.97
HMGB1-205ENST00000399494 MTMR7Q9Y216 660 aa33.61■■■□□ 2.97
HMGB1-205ENST00000399494 GRIN2DO15399 1336 aa33.6■■■□□ 2.97
HMGB1-205ENST00000399494 ACRP10323 421 aa33.6■■■□□ 2.97
HMGB1-205ENST00000399494 CYP2C18P33260 490 aa33.6■■■□□ 2.97
HMGB1-205ENST00000399494 TMEM63BQ5T3F8 832 aa33.6■■■□□ 2.97
HMGB1-205ENST00000399494 CENPQQ7L2Z9 268 aaPredicted RBP33.6■■■□□ 2.97
HMGB1-205ENST00000399494 DCAF4Q8WV16 495 aa33.6■■■□□ 2.97
HMGB1-205ENST00000399494 TIFAQ96CG3 184 aa33.6■■■□□ 2.97
HMGB1-205ENST00000399494 HELLSQ9NRZ9 838 aa33.6■■■□□ 2.97
HMGB1-205ENST00000399494 CCPG1Q9ULG6 757 aa33.6■■■□□ 2.97
HMGB1-205ENST00000399494 GRXCR1A8MXD5 290 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 ICAM1P05362 532 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 ITGA7Q13683 1181 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 TTBK2Q6IQ55 1244 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 BTNL9Q6UXG8 535 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 NSMFQ6X4W1 530 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 EEPD1Q7L9B9 569 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 MORC4Q8TE76 937 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 PURBQ96QR8 312 aaKnown RBP33.59■■■□□ 2.97
HMGB1-205ENST00000399494 Q9Y3F1 56 aa33.59■■■□□ 2.97
HMGB1-205ENST00000399494 TICAM2Q86XR7 235 aa33.58■■■□□ 2.97
HMGB1-205ENST00000399494 RANBP17Q9H2T7 1088 aaKnown RBP33.58■■■□□ 2.97
HMGB1-205ENST00000399494 FGAP02671 866 aa33.57■■■□□ 2.96
HMGB1-205ENST00000399494 PBX2P40425 430 aa33.57■■■□□ 2.96
HMGB1-205ENST00000399494 CCDC96Q2M329 555 aa33.57■■■□□ 2.96
HMGB1-205ENST00000399494 PSRC1Q6PGN9 363 aaPredicted RBP33.57■■■□□ 2.96
HMGB1-205ENST00000399494 FBXO16Q8IX29 292 aaPredicted RBP33.57■■■□□ 2.96
HMGB1-205ENST00000399494 CCDC136Q96JN2 1154 aa33.57■■■□□ 2.96
HMGB1-205ENST00000399494 PBX4Q9BYU1 374 aa33.57■■■□□ 2.96
HMGB1-205ENST00000399494 IL23AQ9NPF7 189 aa33.57■■■□□ 2.96
HMGB1-205ENST00000399494 VCANP13611 3396 aa33.57■■■□□ 2.96
HMGB1-205ENST00000399494 ZEB2O60315 1214 aa33.56■■■□□ 2.96
HMGB1-205ENST00000399494 SLC16A2P36021 539 aa33.56■■■□□ 2.96
HMGB1-205ENST00000399494 SEZ6LQ9BYH1 1024 aa33.56■■■□□ 2.96
HMGB1-205ENST00000399494 VTA1Q9NP79 307 aa33.56■■■□□ 2.96
HMGB1-205ENST00000399494 BAATQ14032 418 aaPredicted RBP33.55■■■□□ 2.96
HMGB1-205ENST00000399494 KIAA1211Q6ZU35 1233 aa33.55■■■□□ 2.96
HMGB1-205ENST00000399494 TMEM47Q9BQJ4 181 aa33.55■■■□□ 2.96
HMGB1-205ENST00000399494 TCP11L1Q9NUJ3 509 aa33.55■■■□□ 2.96
HMGB1-205ENST00000399494 LRRC37A2A6NM11 1700 aa33.54■■■□□ 2.96
HMGB1-205ENST00000399494 TOP1P11387 765 aaKnown RBP33.54■■■□□ 2.96
HMGB1-205ENST00000399494 TTC22Q5TAA0 569 aa33.54■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms