RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 BAIAP2L1Q9UHR4 511 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 CAPN7Q9Y6W3 813 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 ALS2Q96Q42 1657 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 EXOC3O60645 756 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 PNMA6AP0CW24 399 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 VPS41P49754 854 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 POLR2FP61218 127 aaKnown RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 EHHADHQ08426 723 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 LLGL1Q15334 1064 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 MYCT1Q8N699 235 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 U2AF1L4Q8WU68 220 aaKnown RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 PSMD1Q99460 953 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 TUBGCP2Q9BSJ2 902 aa11.9□□□□□ -0.5
CCDC40-204ENST00000397545 TRPC5Q9UL62 973 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 PHRF1Q9P1Y6 1649 aaKnown RBP11.9□□□□□ -0.5
CCDC40-204ENST00000397545 DYNLL1P63167 89 aaKnown RBP11.89□□□□□ -0.51
CCDC40-204ENST00000397545 RUFY4Q6ZNE9 571 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 EYA3Q99504 573 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 MRPL44Q9H9J2 332 aaKnown RBP11.89□□□□□ -0.51
CCDC40-204ENST00000397545 DNM3Q9UQ16 869 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 FRMPD2Q68DX3 1309 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-204ENST00000397545 PPP6R2O75170 966 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 FLOT1O75955 427 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 GUCY2DQ02846 1103 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 WDR66Q8TBY9 1149 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 MAP3K15Q6ZN16 1313 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 CFBP00751 764 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 NKX1-1Q15270 411 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-204ENST00000397545 HAUS3Q68CZ6 603 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 VSTM4Q8IW00 320 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 SEPT12Q8IYM1 358 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 CTNNA1P35221 906 aaKnown RBP11.89□□□□□ -0.51
CCDC40-204ENST00000397545 RASSF7Q02833 373 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 TRAF1Q13077 416 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 LRRC41Q15345 812 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 TRAPPC3LQ5T215 181 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 NLRP10Q86W26 655 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 CCDC105Q8IYK2 499 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 CPXCR1Q8N123 301 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 LRRC47Q8N1G4 583 aaKnown RBP11.89□□□□□ -0.51
CCDC40-204ENST00000397545 GSDMAQ96QA5 445 aa11.89□□□□□ -0.51
CCDC40-204ENST00000397545 CHRNDQ07001 517 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 SETDB1Q15047 1291 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 SMIM5Q71RC9 77 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 MYOCDQ8IZQ8 938 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 USTQ9Y2C2 406 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 HYOU1Q9Y4L1 999 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 AFF2P51816 1311 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 TCHHQ07283 1943 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 ERCC5P28715 1186 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-204ENST00000397545 ZNF365Q70YC5 407 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 INTS8Q75QN2 995 aaKnown RBP11.88□□□□□ -0.51
CCDC40-204ENST00000397545 SCN11AQ9UI33 1791 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 ARHGEF35A5YM69 484 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 ADD2P35612 726 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 HNRNPH2P55795 449 aaKnown RBP11.88□□□□□ -0.51
CCDC40-204ENST00000397545 USPL1Q5W0Q7 1092 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 ANKRD42Q8N9B4 389 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 CAPS2Q9BXY5 557 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 PCDHA12Q9UN75 941 aa11.88□□□□□ -0.51
CCDC40-204ENST00000397545 OR52Z1P0C646 297 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 SLFN14P0C7P3 912 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 GPBP1Q86WP2 473 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 POTEDQ86YR6 584 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 TPH2Q8IWU9 490 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 LCORLQ8N3X6 602 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 RPGRIP1Q96KN7 1286 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 CNOT6LQ96LI5 555 aaKnown RBP11.87□□□□□ -0.51
CCDC40-204ENST00000397545 TACO1Q9BSH4 297 aaKnown RBP11.87□□□□□ -0.51
CCDC40-204ENST00000397545 GPR108Q9NPR9 543 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 KRIT1O00522 736 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 BUB1BO60566 1050 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-204ENST00000397545 CYP2J2P51589 502 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 CYP4A11Q02928 519 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 KMT5BQ4FZB7 885 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 VSIG1Q86XK7 387 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 TTLL11Q8NHH1 800 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 NAP1L3Q99457 506 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-204ENST00000397545 FOXP1Q9H334 677 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-204ENST00000397545 CCDC160A6NGH7 325 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 CIAO1O76071 339 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 TERF2Q15554 542 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 PAXIP1Q6ZW49 1069 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-204ENST00000397545 ENOX1Q8TC92 643 aaKnown RBP11.87□□□□□ -0.51
CCDC40-204ENST00000397545 CEP63Q96MT8 703 aa11.87□□□□□ -0.51
CCDC40-204ENST00000397545 STRCP1A6NGW2 1772 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 SH2B2O14492 632 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 IFNAR1P17181 557 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 TCP1P17987 556 aaKnown RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 MAP3K9P80192 1104 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 LACTBP83111 547 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 CACNB1Q02641 598 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 FNBP1Q96RU3 617 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 GGA1Q9UJY5 639 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 CCDC151A5D8V7 595 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 MMP1P03956 469 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 GTF2IP78347 998 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 NEK8Q86SG6 692 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 SLC4A9Q96Q91 983 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 PPP1R12CQ9BZL4 782 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms