RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SPAG7O75391 227 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 MYO1EQ12965 1108 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 TTBK2Q6IQ55 1244 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 XAGE2Q96GT9 111 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 CXorf56Q9H5V9 222 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 PGRMC1O00264 195 aaKnown RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 ZFXP17010 805 aaPredicted RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 CC2D1AQ6P1N0 951 aaPredicted RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 NBPF10Q6P3W6 841 aaKnown RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 CACYBPQ9HB71 228 aaKnown RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 NFU1Q9UMS0 254 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 MORC2Q9Y6X9 1032 aaPredicted RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 RASGRF2O14827 1237 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 TECP42680 631 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 TAF12Q16514 161 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 OSBPL1AQ9BXW6 950 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 SGK1O00141 431 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 SYF2O95926 243 aaKnown RBP12.9□□□□□ -0.34
SYNPO-202ENST00000394243 FTCDO95954 541 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 ST5P78524 1137 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 PPP2R5BQ15173 497 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 HADHQ16836 314 aaKnown RBP12.9□□□□□ -0.34
SYNPO-202ENST00000394243 GPBP1Q86WP2 473 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 CCDC117Q8IWD4 279 aaPredicted RBP12.9□□□□□ -0.34
SYNPO-202ENST00000394243 FGD4Q96M96 766 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 GGCXP38435 758 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 ECE1P42892 770 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 MRPS25P82663 173 aaKnown RBP12.9□□□□□ -0.34
SYNPO-202ENST00000394243 ST7Q9NRC1 585 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 IKBKBO14920 756 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 CFLARO15519 480 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 PFKFB2O60825 505 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 PDE1BQ01064 536 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 NSMCE1Q8WV22 266 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 PANK4Q9NVE7 773 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 SEPT10Q9P0V9 454 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 PLAAQ9Y263 795 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 SSH2Q76I76 1423 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 DNAJC6O75061 913 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 CD2BP2O95400 341 aaKnown RBP12.9□□□□□ -0.34
SYNPO-202ENST00000394243 MCF2P10911 925 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 NCF2P19878 526 aaPredicted RBP12.9□□□□□ -0.34
SYNPO-202ENST00000394243 RFC4P35249 363 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 ART3Q13508 389 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 BEND6Q5SZJ8 279 aaPredicted RBP12.9□□□□□ -0.34
SYNPO-202ENST00000394243 MAML1Q92585 1016 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 FMO2Q99518 471 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 ANTXR1Q9H6X2 564 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 GRIN2BQ13224 1484 aa12.9□□□□□ -0.34
SYNPO-202ENST00000394243 SETDB2Q96T68 719 aa12.9□□□□□ -0.35
SYNPO-202ENST00000394243 ANAPC5Q9UJX4 755 aa12.9□□□□□ -0.35
SYNPO-202ENST00000394243 PDE6CP51160 858 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 RWDD2BP57060 319 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 HP1BP3Q5SSJ5 553 aaPredicted RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 CDKL2Q92772 493 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 SYMPKQ92797 1274 aaKnown RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 TRAIPQ9BWF2 469 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 ZMYND12Q9H0C1 365 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 EYA2O00167 538 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 STAM2O75886 525 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 MMEP08473 750 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 RAPH1Q70E73 1250 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 NT5C3AQ9H0P0 336 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 RASSF10A6NK89 507 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 GYG2O15488 501 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 OCA2Q04671 838 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 ARID5BQ14865 1188 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 NEK9Q8TD19 979 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 DSCC1Q9BVC3 393 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 KLC4Q9NSK0 619 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 DKC1O60832 514 aaKnown RBP eCLIP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 LONP1P36776 959 aaKnown RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 IRX1P78414 480 aaPredicted RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 NAA30Q147X3 362 aaPredicted RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 SMYD4Q8IYR2 804 aaPredicted RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 NFATC2IPQ8NCF5 419 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 TRIM56Q9BRZ2 755 aaKnown RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 PALM3A6NDB9 673 aaPredicted RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 TOM1L1O75674 476 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 EIF3BP55884 814 aaKnown RBP12.89□□□□□ -0.35
SYNPO-202ENST00000394243 C6orf118Q5T5N4 469 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 NBPF3Q9H094 633 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 DEUP1Q05D60 604 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 POMGNT1Q8WZA1 660 aa12.89□□□□□ -0.35
SYNPO-202ENST00000394243 DCTN3O75935 186 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 TRIM37O94972 964 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 MAP7D3Q8IWC1 876 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 TPH2Q8IWU9 490 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 PITPNM3Q9BZ71 974 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 BIN2Q9UBW5 565 aaPredicted RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 ZNF594Q96JF6 807 aaPredicted RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 SERPINI1Q99574 410 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 RTEL1Q9NZ71 1219 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 TRPC5Q9UL62 973 aaPredicted RBP12.88□□□□□ -0.35
SYNPO-202ENST00000394243 A0A1W2PQ27 194 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 A0A1W2PQ64 194 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 A0A1W2PQD8 194 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 POLD1P28340 1107 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 STX1BP61266 288 aa12.88□□□□□ -0.35
SYNPO-202ENST00000394243 LLGL1Q15334 1064 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms