RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ITPKAP23677 461 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 KRTAP10-3P60369 221 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 CACNB2Q08289 660 aaPredicted RBP0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 PRAMEF18Q5VWM3 479 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 PRAMEF13Q5VWM6 474 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 Q6ZSN1 163 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 VRK3Q8IV63 474 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 FOXP4Q8IVH2 680 aaPredicted RBP0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 ZSCAN29Q8IWY8 852 aaPredicted RBP0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 SPEM1Q8N4L4 309 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 KYQ8NBH2 561 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 SPATA5L1Q9BVQ7 753 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 FAM117AQ9C073 453 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 TMEM168Q9H0V1 697 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 TXLNGQ9NUQ3 528 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 PARPBPQ9NWS1 579 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 AURKAIP1Q9NWT8 199 aaPredicted RBP0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 MTMR4Q9NYA4 1195 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 AMOTL2Q9Y2J4 779 aa0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 GPR55Q9Y2T6 319 aaPredicted RBP0.96□□□□□ -2.26
RNU6-540P-201ENST00000384622 RBM47A0AV96 593 aaKnown RBP0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 TMEM82A0PJX8 343 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 PRAMEF27A3QJZ7 478 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 TNFRSF10BO14763 440 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 SRGAP3O43295 1099 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 TNFRSF21O75509 655 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 CST3P01034 146 aaPredicted RBP0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 CYP2C8P10632 490 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 BICRALQ6AI39 1079 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 TAX1BP1Q86VP1 789 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 FUKQ8N0W3 1084 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 USHBP1Q8N6Y0 703 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 ADAMTS19Q8TE59 1207 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 CPA5Q8WXQ8 436 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 LRRC37BQ96QE4 947 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 LMF1Q96S06 567 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 GORASP1Q9BQQ3 440 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 FOXP3Q9BZS1 431 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 BCAS3Q9H6U6 928 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 SEC61A2Q9H9S3 476 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 CEP72Q9P209 647 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 IMPACTQ9P2X3 320 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 ZDHHC9Q9Y397 364 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 MUC19Q7Z5P9 8384 aa0.95□□□□□ -2.26
RNU6-540P-201ENST00000384622 SETD1BQ9UPS6 1966 aaKnown RBP0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 A0A1W2PQ45 241 aaPredicted RBP0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 A0A1W2PQY0 241 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 FKTNO75072 461 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 RPS6KA4O75676 772 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 PEX11BO96011 259 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 HIBADHP31937 336 aaKnown RBP0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 PPP2R3AQ06190 1150 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 DPYDQ12882 1025 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 FKBP5Q13451 457 aaPredicted RBP0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 HEATR6Q6AI08 1181 aaKnown RBP0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 GSG1LQ6UXU4 331 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 ZPBP2Q6X784 338 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 SLCO6A1Q86UG4 719 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 HID1Q8IV36 788 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 TTLL6Q8N841 843 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 ABTB2Q8N961 1025 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 SNX29Q8TEQ0 813 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 ELMO3Q96BJ8 720 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 FCRL2Q96LA5 508 aaPredicted RBP0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 L2HGDHQ9H9P8 463 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 TCFL5Q9UL49 500 aa0.94□□□□□ -2.26
RNU6-540P-201ENST00000384622 SHISA3A0PJX4 238 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 LRRN2O75325 713 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 POLR3DP05423 398 aaPredicted RBP0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 ARNTP27540 789 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 BMP8BP34820 402 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 FOXG1P55316 489 aaPredicted RBP0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 PCBP3P57721 371 aaKnown RBP0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 DNM1Q05193 864 aaKnown RBP0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 PTPN12Q05209 780 aaKnown RBP0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 MIDNQ504T8 468 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 RPS26P11Q5JNZ5 115 aaPredicted RBP0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 PRR31Q5SQ13 230 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 MAMDC4Q6UXC1 1216 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 ATCAYQ86WG3 371 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 SULF2Q8IWU5 870 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 PRDM13Q9H4Q3 707 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 PCDH18Q9HCL0 1135 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 STIM2Q9P246 746 aa0.93□□□□□ -2.26
RNU6-540P-201ENST00000384622 KRTAP4-16G5E9R7 235 aaPredicted RBP0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 CNOT4O95628 575 aaKnown RBP0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 AZU1P20160 251 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 ABL2P42684 1182 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 ETF1P62495 437 aaKnown RBP0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 RAPGEF1Q13905 1077 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 COL9A2Q14055 689 aaPredicted RBP0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 POLNQ7Z5Q5 900 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 STK32CQ86UX6 486 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 KRT78Q8N1N4 520 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 DNAJC5GQ8N7S2 189 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 STK35Q8TDR2 534 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 EDEM1Q92611 657 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 EMILIN2Q9BXX0 1053 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 TOR3AQ9H497 397 aa0.92□□□□□ -2.26
RNU6-540P-201ENST00000384622 NRDE2Q9H7Z3 1164 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms