RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PRMT6Q96LA8 375 aaPredicted RBP24.34■■□□□ 1.49
TRIM54-202ENST00000380075 MED15Q96RN5 788 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 CTAGE1Q96RT6 745 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 BAZ2BQ9UIF8 2168 aaKnown RBP24.34■■□□□ 1.49
TRIM54-202ENST00000380075 WNT10BO00744 389 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 MYL1P05976 194 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 POTEIP0CG38 1075 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 POTEJP0CG39 1038 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 NAPAP54920 295 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 RBM10P98175 930 aaKnown RBP24.34■■□□□ 1.49
TRIM54-202ENST00000380075 SPECC1LQ69YQ0 1117 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 HHIPL2Q6UWX4 724 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 ASPRV1Q53RT3 343 aa24.33■■□□□ 1.49
TRIM54-202ENST00000380075 USP50Q70EL3 339 aaPredicted RBP24.33■■□□□ 1.49
TRIM54-202ENST00000380075 RASGRP4Q8TDF6 673 aa24.33■■□□□ 1.49
TRIM54-202ENST00000380075 MTMR7Q9Y216 660 aa24.33■■□□□ 1.49
TRIM54-202ENST00000380075 SCN4AP35499 1836 aa24.33■■□□□ 1.49
TRIM54-202ENST00000380075 A0A1B0GTH6 734 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 SPDYE2BA6NHP3 402 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 PPP1R3GB7ZBB8 358 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 TMEM232C9JQI7 657 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 SPDYE6P0CI01 402 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 GOLGA8HP0CJ92 632 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 PNMA8AQ86V59 439 aaPredicted RBP24.33■■□□□ 1.48
TRIM54-202ENST00000380075 MTMR14Q8NCE2 650 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 ZBED3Q96IU2 234 aaPredicted RBP24.33■■□□□ 1.48
TRIM54-202ENST00000380075 ZDHHC15Q96MV8 337 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 CCSER1Q9C0I3 900 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 RIOX1Q9H6W3 641 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 DISC1Q9NRI5 854 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 TRMT1Q9NXH9 659 aaKnown RBP24.33■■□□□ 1.48
TRIM54-202ENST00000380075 MTMR4Q9NYA4 1195 aa24.33■■□□□ 1.48
TRIM54-202ENST00000380075 ASTN2O75129 1339 aaPredicted RBP24.32■■□□□ 1.48
TRIM54-202ENST00000380075 NONOQ15233 471 aaKnown RBP eCLIP24.32■■□□□ 1.48
TRIM54-202ENST00000380075 INF2Q27J81 1249 aa24.32■■□□□ 1.48
TRIM54-202ENST00000380075 PPP4R3BQ5MIZ7 849 aa24.32■■□□□ 1.48
TRIM54-202ENST00000380075 APOBEC3HQ6NTF7 200 aaKnown RBP24.32■■□□□ 1.48
TRIM54-202ENST00000380075 USP17L2Q6R6M4 530 aa24.32■■□□□ 1.48
TRIM54-202ENST00000380075 KIF18AQ8NI77 898 aa24.32■■□□□ 1.48
TRIM54-202ENST00000380075 PPP1R13BQ96KQ4 1090 aa24.32■■□□□ 1.48
TRIM54-202ENST00000380075 AK8Q96MA6 479 aa24.32■■□□□ 1.48
TRIM54-202ENST00000380075 IGKV6D-41A0A0C4DH26 115 aa24.31■■□□□ 1.48
TRIM54-202ENST00000380075 KIF3CO14782 793 aa24.31■■□□□ 1.48
TRIM54-202ENST00000380075 CD44P16070 742 aaKnown RBP24.31■■□□□ 1.48
TRIM54-202ENST00000380075 STAT6P42226 847 aa24.31■■□□□ 1.48
TRIM54-202ENST00000380075 NR1I3Q14994 352 aa24.31■■□□□ 1.48
TRIM54-202ENST00000380075 CDKAL1Q5VV42 579 aa24.31■■□□□ 1.48
TRIM54-202ENST00000380075 MAGEF1Q9HAY2 307 aa24.31■■□□□ 1.48
TRIM54-202ENST00000380075 SAMSN1Q9NSI8 373 aaKnown RBP24.31■■□□□ 1.48
TRIM54-202ENST00000380075 CUEDC2Q9H467 287 aa24.31■■□□□ 1.48
TRIM54-202ENST00000380075 SMCO2A6NFE2 343 aa24.3■■□□□ 1.48
TRIM54-202ENST00000380075 ARHGAP6O43182 974 aa24.3■■□□□ 1.48
TRIM54-202ENST00000380075 PDHBP11177 359 aa24.3■■□□□ 1.48
TRIM54-202ENST00000380075 ZNF658Q5TYW1 1059 aaPredicted RBP24.3■■□□□ 1.48
TRIM54-202ENST00000380075 SERPINB13Q9UIV8 391 aa24.3■■□□□ 1.48
TRIM54-202ENST00000380075 ADAMTSL1Q8N6G6 1762 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 SNHG28P0DPA3 235 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 UBA7P41226 1012 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 TDRD3Q9H7E2 651 aaKnown RBP24.29■■□□□ 1.48
TRIM54-202ENST00000380075 RWDD2AQ9UIY3 292 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 CASP1P29466 404 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 PICALMQ13492 652 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 FILIP1LQ4L180 1135 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 RRAGBQ5VZM2 374 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 KLHL10Q6JEL2 608 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 MTRQ99707 1265 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 TMEM60Q9H2L4 133 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 USP40Q9NVE5 1235 aa24.29■■□□□ 1.48
TRIM54-202ENST00000380075 STX10O60499 249 aa24.28■■□□□ 1.48
TRIM54-202ENST00000380075 RPN1P04843 607 aaKnown RBP24.28■■□□□ 1.48
TRIM54-202ENST00000380075 SPAG1Q07617 926 aa24.28■■□□□ 1.48
TRIM54-202ENST00000380075 NEK8Q86SG6 692 aa24.28■■□□□ 1.48
TRIM54-202ENST00000380075 ZNF592Q92610 1267 aa24.28■■□□□ 1.48
TRIM54-202ENST00000380075 CLEC11AQ9Y240 323 aa24.28■■□□□ 1.48
TRIM54-202ENST00000380075 CLRN2A0PK11 232 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 USP17L5A8MUK1 530 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 TTLL1O95922 423 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 HLA-DOAP06340 250 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 OR52Z1P0C646 297 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 KCNB1Q14721 858 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 APTXQ7Z2E3 356 aaKnown RBP24.27■■□□□ 1.48
TRIM54-202ENST00000380075 HOMER1Q86YM7 354 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 ZSCAN12O43309 604 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 KARSQ15046 597 aaKnown RBP24.27■■□□□ 1.48
TRIM54-202ENST00000380075 HSP90AA4PQ58FG1 418 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 PPP1R18Q6NYC8 613 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 PIGSQ96S52 555 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 EHD4Q9H223 541 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 BLZF1Q9H2G9 400 aa24.27■■□□□ 1.48
TRIM54-202ENST00000380075 DDX4Q9NQI0 724 aaKnown RBP24.27■■□□□ 1.48
TRIM54-202ENST00000380075 SCAF8Q9UPN6 1271 aaKnown RBP24.27■■□□□ 1.48
TRIM54-202ENST00000380075 PAK1Q13153 545 aa24.26■■□□□ 1.47
TRIM54-202ENST00000380075 ANGEL2Q5VTE6 544 aaKnown RBP24.26■■□□□ 1.47
TRIM54-202ENST00000380075 CDC42EP5Q6NZY7 148 aa24.26■■□□□ 1.47
TRIM54-202ENST00000380075 TMEM139Q8IV31 216 aa24.26■■□□□ 1.47
TRIM54-202ENST00000380075 REXO1Q8N1G1 1221 aaKnown RBP24.26■■□□□ 1.47
TRIM54-202ENST00000380075 RASSF8Q8NHQ8 419 aa24.26■■□□□ 1.47
TRIM54-202ENST00000380075 GTPBP4Q9BZE4 634 aaKnown RBP24.26■■□□□ 1.47
TRIM54-202ENST00000380075 GGA3Q9NZ52 723 aa24.26■■□□□ 1.47
TRIM54-202ENST00000380075 ADD3Q9UEY8 706 aaKnown RBP24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms