RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 SLC7A5P2Q9GIP4 190 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 ABCF3Q9NUQ8 709 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 MAPK8IP1Q9UQF2 711 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 CAPN7Q9Y6W3 813 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 NEURL4Q96JN8 1562 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 RNF113AO15541 343 aaKnown RBP11.58□□□□□ -0.56
RTN3-206ENST00000377819 GNA14O95837 355 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 PRKG1Q13976 671 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 RCN2Q14257 317 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 CCDC85BQ15834 202 aaPredicted RBP11.58□□□□□ -0.56
RTN3-206ENST00000377819 CAPN12Q6ZSI9 719 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 METTL23Q86XA0 190 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 MAGEB6Q8N7X4 407 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 RDH13Q8NBN7 331 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 TLR3O15455 904 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 E2F6O75461 281 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 KCNA4P22459 653 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 RARSP54136 660 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 IL9RQ01113 521 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 E4F1Q66K89 784 aaPredicted RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 DPY19L2Q6NUT2 758 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 COPS6Q7L5N1 327 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 BTN2A2Q8WVV5 523 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 JARID2Q92833 1246 aaPredicted RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 NAF1Q96HR8 494 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 MTRQ99707 1265 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 ANKRD50Q9ULJ7 1429 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 MBD5Q9P267 1494 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 INO80Q9ULG1 1556 aaPredicted RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 SYCE1LA8MT33 242 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 SLC4A1P02730 911 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 PMLP29590 882 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 BPIFB4P59827 614 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 MAP3K10Q02779 954 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 PPARDQ03181 441 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 ART3Q13508 389 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 SRRM1Q8IYB3 904 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 SERPINI1Q99574 410 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 KIF2CQ99661 725 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 SLITRK6Q9H5Y7 841 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 DONSONQ9NYP3 566 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 CCNT1O60563 726 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 XRCC5P13010 732 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 TRIM67Q6ZTA4 783 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 PCGF5Q86SE9 256 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 U2AF1L4Q8WU68 220 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 IPO5O00410 1097 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 BRD1O95696 1058 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 APOA1P02647 267 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 GSNP06396 782 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 SOX5P35711 763 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 TNFAIP1Q13829 316 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 PPP6R3Q5H9R7 873 aaPredicted RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 KRT28Q7Z3Y7 464 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 ZCRB1Q8TBF4 217 aaKnown RBP11.57□□□□□ -0.56
RTN3-206ENST00000377819 XAGE3Q8WTP9 111 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 EPAS1Q99814 870 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 COG4Q9H9E3 785 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 POLKQ9UBT6 870 aa11.57□□□□□ -0.56
RTN3-206ENST00000377819 SYNJ2BP-COX16A0A087WUM0 186 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 UBAP1LF5GYI3 381 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 FASTKD5Q7L8L6 764 aaKnown RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 SMAP1Q8IYB5 467 aaPredicted RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 TTC30BQ8N4P2 665 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 COX16Q9P0S2 106 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 KCNH3Q9ULD8 1083 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 SNX5Q9Y5X3 404 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 GRM8O00222 908 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 KRIT1O00522 736 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 GAS7O60861 476 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 ATF2P15336 505 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 ZFXP17010 805 aaPredicted RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 ADCY7P51828 1080 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 TTBK2Q6IQ55 1244 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 NELFCDQ8IXH7 590 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 TSC1Q92574 1164 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 RBM17Q96I25 401 aaKnown RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 NACC1Q96RE7 527 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 OSBPL10Q9BXB5 764 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 MAP3K4Q9Y6R4 1608 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 EIF3CLB5ME19 914 aaKnown RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 ZSCAN9O15535 394 aaPredicted RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 ABCB4P21439 1286 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 NSFP46459 744 aaKnown RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 CAPZA2P47755 286 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 FOXD4Q12950 439 aaPredicted RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 DZIP3Q86Y13 1208 aaKnown RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 SUPT20HQ8NEM7 779 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 EIF3CQ99613 913 aaKnown RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 SUGCTQ9HAC7 445 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 NLRC4Q9NPP4 1024 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 MKL2Q9ULH7 1088 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 JRKLQ9Y4A0 524 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 GPATCH8Q9UKJ3 1502 aaKnown RBP11.56□□□□□ -0.56
RTN3-206ENST00000377819 SPOPLQ6IQ16 392 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 CCNYQ8ND76 341 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 SLC26A7Q8TE54 656 aa11.56□□□□□ -0.56
RTN3-206ENST00000377819 TMEM87BQ96K49 555 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms