RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 DCDC2CA8MYV0 355 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 ADCY6O43306 1168 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 DUSP11O75319 330 aaKnown RBP12.28□□□□□ -0.44
CLRN3-201ENST00000368671 MX1P20591 662 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 STAT2P52630 851 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 OAZ1P54368 228 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 SMAD3P84022 425 aaKnown RBP12.28□□□□□ -0.44
CLRN3-201ENST00000368671 PLCB2Q00722 1185 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 FPGSQ05932 587 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 CTDSPL2Q05D32 466 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 FAAP100Q0VG06 881 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 CCDC144BQ3MJ40 725 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 CCDC129Q6ZRS4 1044 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 ARMCX2Q7L311 632 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 VTI1AQ96AJ9 217 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 GLT1D1Q96MS3 346 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 CDX2Q99626 313 aaPredicted RBP12.28□□□□□ -0.44
CLRN3-201ENST00000368671 SEMA6BQ9H3T3 888 aa12.28□□□□□ -0.44
CLRN3-201ENST00000368671 TSPY2A6NKD2 308 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 ASGR1P07306 291 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 MCCP23508 829 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 SLC1A4P43007 532 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 SNAP25P60880 206 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 CNTN2Q02246 1040 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 CCSAPQ6IQ19 270 aaPredicted RBP12.27□□□□□ -0.45
CLRN3-201ENST00000368671 CCDC174Q6PII3 467 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLRN3-201ENST00000368671 ANKRD33Q7Z3H0 272 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 FAM160B2Q86V87 743 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLRN3-201ENST00000368671 CCDC144CPQ8IYA2 1237 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 MYLIPQ8WY64 445 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 DDX27Q96GQ7 796 aaKnown RBP12.27□□□□□ -0.45
CLRN3-201ENST00000368671 AGBL1Q96MI9 1066 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 LARP6Q9BRS8 491 aaKnown RBP12.27□□□□□ -0.45
CLRN3-201ENST00000368671 ABHD16BQ9H3Z7 469 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 ACAD9Q9H845 621 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 SPC25Q9HBM1 224 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 INCENPQ9NQS7 918 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 RNF146Q9NTX7 359 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 STX8Q9UNK0 236 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 MTMR7Q9Y216 660 aa12.27□□□□□ -0.45
CLRN3-201ENST00000368671 POTEMA6NI47 508 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 FDX1P10109 184 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 ALAS1P13196 640 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 CST5P28325 142 aaPredicted RBP12.26□□□□□ -0.45
CLRN3-201ENST00000368671 GNASQ5JWF2 1037 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 POTEGQ6S5H5 508 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 KCTD1Q719H9 257 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 RASGRP2Q7LDG7 609 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 PCSK9Q8NBP7 692 aaKnown RBP12.26□□□□□ -0.45
CLRN3-201ENST00000368671 CHURC1Q8WUH1 139 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 STAG1Q8WVM7 1258 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 GMCL1Q96IK5 515 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 TOX2Q96NM4 488 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 TTYH1Q9H313 450 aaPredicted RBP12.26□□□□□ -0.45
CLRN3-201ENST00000368671 A1CFQ9NQ94 594 aaKnown RBP12.26□□□□□ -0.45
CLRN3-201ENST00000368671 ZNF536O15090 1300 aa12.26□□□□□ -0.45
CLRN3-201ENST00000368671 LAMA3Q16787 3333 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.25□□□□□ -0.45
CLRN3-201ENST00000368671 SOWAHBA6NEL2 793 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 FOXP2O15409 715 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 NMT2O60551 498 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 GJA9P57773 515 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 BEX3Q00994 111 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 PPP4R3BQ5MIZ7 849 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 ANKRD45Q5TZF3 282 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 VPS53Q5VIR6 699 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 NOL8Q76FK4 1167 aaKnown RBP12.25□□□□□ -0.45
CLRN3-201ENST00000368671 FAM133AQ8N9E0 248 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 MAFAQ8NHW3 353 aaPredicted RBP12.25□□□□□ -0.45
CLRN3-201ENST00000368671 TRERF1Q96PN7 1200 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 COL25A1Q9BXS0 654 aaPredicted RBP12.25□□□□□ -0.45
CLRN3-201ENST00000368671 KATNBL1Q9H079 304 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 UPF3AQ9H1J1 476 aaKnown RBP12.25□□□□□ -0.45
CLRN3-201ENST00000368671 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLRN3-201ENST00000368671 ELP1O95163 1332 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 MROH7Q68CQ1 1323 aa12.25□□□□□ -0.45
CLRN3-201ENST00000368671 A0A0U1RQG5 324 aaPredicted RBP12.24□□□□□ -0.45
CLRN3-201ENST00000368671 ARVCFO00192 962 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 TLR3O15455 904 aaKnown RBP12.24□□□□□ -0.45
CLRN3-201ENST00000368671 RANBP6O60518 1105 aaKnown RBP12.24□□□□□ -0.45
CLRN3-201ENST00000368671 TIMP1P01033 207 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 LCTP09848 1927 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 FOSL2P15408 326 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 TNFAIP2Q03169 654 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 CCDC96Q2M329 555 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 TKFCQ3LXA3 575 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 MUM1L1Q5H9M0 696 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 RCSD1Q6JBY9 416 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 PTCD2Q8WV60 388 aaKnown RBP12.24□□□□□ -0.45
CLRN3-201ENST00000368671 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLRN3-201ENST00000368671 SALL3Q9BXA9 1300 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 PPP1R12CQ9BZL4 782 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 IL17RBQ9NRM6 502 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 TOMM22Q9NS69 142 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 TBX21Q9UL17 535 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 PRR12Q9ULL5 1215 aa12.24□□□□□ -0.45
CLRN3-201ENST00000368671 DDX49Q9Y6V7 483 aaKnown RBP12.24□□□□□ -0.45
CLRN3-201ENST00000368671 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms