RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 PIGSQ96S52 555 aa17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 CYP46A1Q9Y6A2 500 aa17.53■□□□□ 0.4
SMPDL3A-201ENST00000368440 DNAJC25-GNG10A0A024R161 153 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 IGHA2P01877 340 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 KIF5BP33176 963 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 ANAPC15P60006 121 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 FBXL16Q8N461 479 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 SRBD1Q8N5C6 995 aaKnown RBP17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 FANCBQ8NB91 859 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 CLEC4DQ8WXI8 215 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 PIBF1Q8WXW3 757 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 MAML3Q96JK9 1138 aa17.52■□□□□ 0.4
SMPDL3A-201ENST00000368440 ZBTB43O43298 467 aa17.52■□□□□ 0.39
SMPDL3A-201ENST00000368440 EIF5BO60841 1220 aaKnown RBP17.52■□□□□ 0.39
SMPDL3A-201ENST00000368440 SOX10P56693 466 aa17.52■□□□□ 0.39
SMPDL3A-201ENST00000368440 SYNE3Q6ZMZ3 975 aa17.52■□□□□ 0.39
SMPDL3A-201ENST00000368440 DDX11Q96FC9 970 aa17.52■□□□□ 0.39
SMPDL3A-201ENST00000368440 FGD4Q96M96 766 aa17.52■□□□□ 0.39
SMPDL3A-201ENST00000368440 UNC93B1Q9H1C4 597 aa17.52■□□□□ 0.39
SMPDL3A-201ENST00000368440 NAP1L2Q9ULW6 460 aaPredicted RBP17.52■□□□□ 0.39
SMPDL3A-201ENST00000368440 ZBTB5O15062 677 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 CCL5P13501 91 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 CYP2C19P33261 490 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 UBXN2AP68543 259 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 CACNB2Q08289 660 aaPredicted RBP17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 NSMFQ6X4W1 530 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 TMTC3Q6ZXV5 915 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 FBXO11Q86XK2 927 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 IL17RAQ96F46 866 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 LARP6Q9BRS8 491 aaKnown RBP17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 SPZ1Q9BXG8 430 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 MCM3APO60318 1980 aa17.51■□□□□ 0.39
SMPDL3A-201ENST00000368440 POTEFA5A3E0 1075 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 GOLGA8AA7E2F4 631 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 GOLGA8BA8MQT2 603 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 PRKAR2AP13861 404 aaKnown RBP17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 CDC27P30260 824 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 CNTN2Q02246 1040 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 MAP3K21Q5TCX8 1036 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 TRMT44Q8IYL2 757 aaKnown RBP17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 CCDC82Q8N4S0 544 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 PURBQ96QR8 312 aaKnown RBP17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 FAM217BQ9NTX9 383 aaPredicted RBP17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 CYP39A1Q9NYL5 469 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 FRMPD3Q5JV73 1810 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 RTN1Q16799 776 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 OLFML2BQ68BL8 750 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 SLC30A10Q6XR72 485 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 PDRG1Q9NUG6 133 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 SLC5A4Q9NY91 659 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 LRRC37A2A6NM11 1700 aa17.5■□□□□ 0.39
SMPDL3A-201ENST00000368440 ASTN1O14525 1302 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 ABCB11O95342 1321 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 CNTNAP5Q8WYK1 1306 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 GNAQP50148 359 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 FAM133AQ8N9E0 248 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 LZTS2Q9BRK4 669 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 AMNQ9BXJ7 453 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 PNMA2Q9UL42 364 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 DIS3Q9Y2L1 958 aaKnown RBP17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 NID2Q14112 1375 aa17.49■□□□□ 0.39
SMPDL3A-201ENST00000368440 PFASO15067 1338 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 hCG_1642624A0A1W2PR95 340 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 SOWAHBA6NEL2 793 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 POTEB2H3BUK9 544 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 CCND3P30281 292 aaPredicted RBP17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 METAP2P50579 478 aaKnown RBP eCLIP17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 BAATQ14032 418 aaPredicted RBP17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 TBC1D5Q92609 795 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 RNF208Q9H0X6 261 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 DDX49Q9Y6V7 483 aaKnown RBP17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 PNMA6FA0A0J9YX94 578 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 PTPDC1A2A3K4 754 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 OPLAHO14841 1288 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 SMARCA1P28370 1054 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 ADD1P35611 737 aaKnown RBP17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 EVCP57679 992 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 FUT2Q10981 343 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 MFSD14CQ5VZR4 134 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 TRPV1Q8NER1 839 aa17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 RBM28Q9NW13 759 aaKnown RBP17.48■□□□□ 0.39
SMPDL3A-201ENST00000368440 RPTORQ8N122 1335 aa17.47■□□□□ 0.39
SMPDL3A-201ENST00000368440 PDIA3P30101 505 aaKnown RBP17.47■□□□□ 0.39
SMPDL3A-201ENST00000368440 RCAN1P53805 252 aa17.47■□□□□ 0.39
SMPDL3A-201ENST00000368440 PRAMEF19Q5SWL8 479 aa17.47■□□□□ 0.39
SMPDL3A-201ENST00000368440 RRP36Q96EU6 259 aaKnown RBP17.47■□□□□ 0.39
SMPDL3A-201ENST00000368440 TINF2Q9BSI4 451 aa17.47■□□□□ 0.39
SMPDL3A-201ENST00000368440 PAK6Q9NQU5 681 aaPredicted RBP17.47■□□□□ 0.39
SMPDL3A-201ENST00000368440 PCDHA1Q9Y5I3 950 aa17.47■□□□□ 0.39
SMPDL3A-201ENST00000368440 CYBAP13498 195 aa17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 CALML3P27482 149 aa17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 RPS6P62753 249 aaKnown RBP17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 RNF207Q6ZRF8 634 aa17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 KIF2CQ99661 725 aa17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 TMEM106CQ9BVX2 250 aa17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 C22orf23Q9BZE7 217 aa17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 NCOA5Q9HCD5 579 aaKnown RBP17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 HMX1Q9NP08 348 aaPredicted RBP17.46■□□□□ 0.39
SMPDL3A-201ENST00000368440 MRPL11Q9Y3B7 192 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms