RNA–Protein interactions for RNA: ENST00000368436.1

CKS1B-202, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 2 BASIC

Gene CKS1B, Length 820 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-202ENST00000368436 ICAM1P05362 532 aa18.92■□□□□ 0.62
CKS1B-202ENST00000368436 HSPD1P10809 573 aaKnown RBP18.92■□□□□ 0.62
CKS1B-202ENST00000368436 TNFAIP2Q03169 654 aa18.92■□□□□ 0.62
CKS1B-202ENST00000368436 TMEM47Q9BQJ4 181 aa18.92■□□□□ 0.62
CKS1B-202ENST00000368436 RANBP17Q9H2T7 1088 aaKnown RBP18.92■□□□□ 0.62
CKS1B-202ENST00000368436 GNEQ9Y223 722 aaKnown RBP18.92■□□□□ 0.62
CKS1B-202ENST00000368436 LAMA2P24043 3122 aaKnown RBP18.92■□□□□ 0.62
CKS1B-202ENST00000368436 A0A0U1RQG5 324 aaPredicted RBP18.91■□□□□ 0.62
CKS1B-202ENST00000368436 TOP1P11387 765 aaKnown RBP18.91■□□□□ 0.62
CKS1B-202ENST00000368436 NMIQ13287 307 aaPredicted RBP18.91■□□□□ 0.62
CKS1B-202ENST00000368436 AAMPQ13685 434 aa18.91■□□□□ 0.62
CKS1B-202ENST00000368436 TTBK2Q6IQ55 1244 aa18.91■□□□□ 0.62
CKS1B-202ENST00000368436 MORC4Q8TE76 937 aa18.91■□□□□ 0.62
CKS1B-202ENST00000368436 RNPC3Q96LT9 517 aaKnown RBP18.91■□□□□ 0.62
CKS1B-202ENST00000368436 CDX2Q99626 313 aaPredicted RBP18.91■□□□□ 0.62
CKS1B-202ENST00000368436 TTYH1Q9H313 450 aaPredicted RBP18.91■□□□□ 0.62
CKS1B-202ENST00000368436 CCPG1Q9ULG6 757 aa18.91■□□□□ 0.62
CKS1B-202ENST00000368436 BEX3Q00994 111 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 CCDC96Q2M329 555 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 IQSEC1Q6DN90 963 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 MFSD5Q6N075 450 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 TAPT1Q6NXT6 567 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 ZNF589Q86UQ0 364 aaPredicted RBP18.9■□□□□ 0.62
CKS1B-202ENST00000368436 FAM126BQ8IXS8 530 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 SMC5Q8IY18 1101 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 VTI1AQ96AJ9 217 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 LNPKQ9C0E8 428 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 MTMR7Q9Y216 660 aa18.9■□□□□ 0.62
CKS1B-202ENST00000368436 CD4P01730 458 aa18.89■□□□□ 0.61
CKS1B-202ENST00000368436 PCP11498 1178 aaKnown RBP18.89■□□□□ 0.61
CKS1B-202ENST00000368436 SMPD1P17405 629 aa18.89■□□□□ 0.61
CKS1B-202ENST00000368436 SLC16A2P36021 539 aa18.89■□□□□ 0.61
CKS1B-202ENST00000368436 RRP12Q5JTH9 1297 aaKnown RBP18.89■□□□□ 0.61
CKS1B-202ENST00000368436 SLC43A3Q8NBI5 491 aa18.89■□□□□ 0.61
CKS1B-202ENST00000368436 TOMM22Q9NS69 142 aa18.89■□□□□ 0.61
CKS1B-202ENST00000368436 Q9Y3F1 56 aa18.89■□□□□ 0.61
CKS1B-202ENST00000368436 DDX49Q9Y6V7 483 aaKnown RBP18.89■□□□□ 0.61
CKS1B-202ENST00000368436 CCDC171Q6TFL3 1326 aa18.89■□□□□ 0.61
CKS1B-202ENST00000368436 TMEM265A0A087WTH1 108 aa18.88■□□□□ 0.61
CKS1B-202ENST00000368436 CABYRO75952 493 aa18.88■□□□□ 0.61
CKS1B-202ENST00000368436 SYDE2Q5VT97 1194 aa18.88■□□□□ 0.61
CKS1B-202ENST00000368436 NSMFQ6X4W1 530 aa18.88■□□□□ 0.61
CKS1B-202ENST00000368436 NOL8Q76FK4 1167 aaKnown RBP18.88■□□□□ 0.61
CKS1B-202ENST00000368436 TLK2Q86UE8 772 aa18.88■□□□□ 0.61
CKS1B-202ENST00000368436 TTC14Q96N46 770 aa18.88■□□□□ 0.61
CKS1B-202ENST00000368436 PURBQ96QR8 312 aaKnown RBP18.88■□□□□ 0.61
CKS1B-202ENST00000368436 VTA1Q9NP79 307 aa18.88■□□□□ 0.61
CKS1B-202ENST00000368436 PDGFCQ9NRA1 345 aa18.88■□□□□ 0.61
CKS1B-202ENST00000368436 LOC102724159A0A0B4J2E5 919 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 TRIM6-TRIM34B2RNG4 842 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 TLR3O15455 904 aaKnown RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 PDHBP11177 359 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 HAND2P61296 217 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 BAATQ14032 418 aaPredicted RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 PWP2Q15269 919 aaKnown RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 LAMA4Q16363 1823 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 FSCN1Q16658 493 aaKnown RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 AKNAD1Q5T1N1 836 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 FRMPD2Q68DX3 1309 aaPredicted RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 CXCL17Q6UXB2 119 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 C16orf59Q7L2K0 433 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 FBXO16Q8IX29 292 aaPredicted RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 AP5M1Q9H0R1 490 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 OSBPL3Q9H4L5 887 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 GPCPD1Q9NPB8 672 aa18.87■□□□□ 0.61
CKS1B-202ENST00000368436 ADD3Q9UEY8 706 aaKnown RBP18.87■□□□□ 0.61
CKS1B-202ENST00000368436 GRIN2DO15399 1336 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 DYNC1LI2O43237 492 aaPredicted RBP18.86■□□□□ 0.61
CKS1B-202ENST00000368436 SNHG28P0DPA3 235 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 SDSP20132 328 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 PTGS1P23219 599 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 PPIGQ13427 754 aaKnown RBP eCLIP18.86■□□□□ 0.61
CKS1B-202ENST00000368436 TMEM240Q5SV17 173 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 TMEM63BQ5T3F8 832 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 MFSD6Q6ZSS7 791 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 EEPD1Q7L9B9 569 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.86■□□□□ 0.61
CKS1B-202ENST00000368436 TMEM199Q8N511 208 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 RILPL2Q969X0 211 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 SEZ6LQ9BYH1 1024 aa18.86■□□□□ 0.61
CKS1B-202ENST00000368436 RWDD1Q9H446 243 aaPredicted RBP18.86■□□□□ 0.61
CKS1B-202ENST00000368436 NFIBO00712 420 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 CSF2RAP15509 400 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 ALDH5A1P51649 535 aaPredicted RBP18.85■□□□□ 0.61
CKS1B-202ENST00000368436 MFAP1P55081 439 aaKnown RBP18.85■□□□□ 0.61
CKS1B-202ENST00000368436 ZNF543Q08ER8 600 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 RASIP1Q5U651 963 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 TBC1D10CQ8IV04 446 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 PLEKHM2Q8IWE5 1019 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 CLEC4DQ8WXI8 215 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 MYLIPQ8WY64 445 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 PNMA2Q9UL42 364 aa18.85■□□□□ 0.61
CKS1B-202ENST00000368436 RBM47A0AV96 593 aaKnown RBP18.84■□□□□ 0.61
CKS1B-202ENST00000368436 ZEB2O60315 1214 aa18.84■□□□□ 0.61
CKS1B-202ENST00000368436 ITGA7Q13683 1181 aa18.84■□□□□ 0.61
CKS1B-202ENST00000368436 DUSP28Q4G0W2 176 aa18.84■□□□□ 0.61
CKS1B-202ENST00000368436 B4GALNT3Q6L9W6 998 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms