RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 BIN2Q9UBW5 565 aaPredicted RBP22.79■■□□□ 1.24
CLN3-205ENST00000359984 CCPG1Q9ULG6 757 aa22.79■■□□□ 1.24
CLN3-205ENST00000359984 CTDP1Q9Y5B0 961 aaPredicted RBP22.79■■□□□ 1.24
CLN3-205ENST00000359984 GOLGA6L22H0YM25 854 aa22.78■■□□□ 1.24
CLN3-205ENST00000359984 OPLAHO14841 1288 aa22.78■■□□□ 1.24
CLN3-205ENST00000359984 YY1P25490 414 aa22.78■■□□□ 1.24
CLN3-205ENST00000359984 GTF2A2P52657 109 aa22.78■■□□□ 1.24
CLN3-205ENST00000359984 CEBPZQ03701 1054 aaKnown RBP22.78■■□□□ 1.24
CLN3-205ENST00000359984 TMEM260Q9NX78 707 aa22.78■■□□□ 1.24
CLN3-205ENST00000359984 MYH15Q9Y2K3 1946 aa22.78■■□□□ 1.24
CLN3-205ENST00000359984 ZBTB48P10074 688 aaPredicted RBP22.77■■□□□ 1.24
CLN3-205ENST00000359984 UBE2SQ16763 222 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 GLT8D2Q9H1C3 349 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 CLIC4Q9Y696 253 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 ABCB11O95342 1321 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 CCDC194A0A1B0GVG4 234 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 DDX11L8A8MPP1 907 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 PRPF40AO75400 957 aaKnown RBP22.77■■□□□ 1.24
CLN3-205ENST00000359984 CETPP11597 493 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 CLK2P49760 499 aaKnown RBP22.77■■□□□ 1.24
CLN3-205ENST00000359984 RILPL1Q5EBL4 403 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 JAKMIP3Q5VZ66 844 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 P2RX7Q99572 595 aaKnown RBP22.77■■□□□ 1.24
CLN3-205ENST00000359984 SCAND2PQ9GZW5 306 aaPredicted RBP22.77■■□□□ 1.24
CLN3-205ENST00000359984 ASCC2Q9H1I8 757 aaPredicted RBP22.77■■□□□ 1.24
CLN3-205ENST00000359984 RTEL1Q9NZ71 1219 aa22.77■■□□□ 1.24
CLN3-205ENST00000359984 MRPL11Q9Y3B7 192 aaKnown RBP22.77■■□□□ 1.24
CLN3-205ENST00000359984 SMCHD1A6NHR9 2005 aa22.76■■□□□ 1.23
CLN3-205ENST00000359984 IRX3P78415 501 aaPredicted RBP22.76■■□□□ 1.23
CLN3-205ENST00000359984 ANO1Q5XXA6 986 aa22.76■■□□□ 1.23
CLN3-205ENST00000359984 TMEM87AQ8NBN3 555 aa22.76■■□□□ 1.23
CLN3-205ENST00000359984 ZNF784Q8NCA9 323 aaPredicted RBP22.76■■□□□ 1.23
CLN3-205ENST00000359984 LEO1Q8WVC0 666 aaPredicted RBP22.76■■□□□ 1.23
CLN3-205ENST00000359984 LMBRD1Q9NUN5 540 aa22.76■■□□□ 1.23
CLN3-205ENST00000359984 MEIS2O14770 477 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 ZNF157P51786 506 aaPredicted RBP22.75■■□□□ 1.23
CLN3-205ENST00000359984 TMEM132BQ14DG7 1078 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 USP17L6PQ6QN14 398 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 POTEEQ6S8J3 1075 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 KRT25Q7Z3Z0 450 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 RASAL3Q86YV0 1011 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 SPATA32Q96LK8 384 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 POLR3EQ9NVU0 708 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 RCOR1Q9UKL0 485 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 TLL2Q9Y6L7 1015 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 CCL15-CCL14A0A0B4J2E2 113 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 ATP2B1P20020 1258 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 NASPP49321 788 aaPredicted RBP22.75■■□□□ 1.23
CLN3-205ENST00000359984 OAZ1P54368 228 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 PABPC4Q13310 644 aaKnown RBP eCLIP22.75■■□□□ 1.233e-6■■■■□ 26.6
CLN3-205ENST00000359984 CCL15Q16663 113 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 RGMBQ6NW40 437 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 BRI3BPQ8WY22 251 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 PNMA2Q9UL42 364 aa22.75■■□□□ 1.23
CLN3-205ENST00000359984 ZNF214Q9UL59 606 aaPredicted RBP22.75■■□□□ 1.23
CLN3-205ENST00000359984 NOL7Q9UMY1 257 aaKnown RBP22.75■■□□□ 1.23
CLN3-205ENST00000359984 ATP2A1O14983 1001 aa22.74■■□□□ 1.23
CLN3-205ENST00000359984 ALAS1P13196 640 aa22.74■■□□□ 1.23
CLN3-205ENST00000359984 SF3A1Q15459 793 aaKnown RBP22.74■■□□□ 1.23
CLN3-205ENST00000359984 PCDHB6Q9Y5E3 794 aa22.74■■□□□ 1.23
CLN3-205ENST00000359984 WNT7AO00755 349 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 OSBPP22059 807 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 NONOQ15233 471 aaKnown RBP eCLIP22.73■■□□□ 1.23
CLN3-205ENST00000359984 LBX2Q6XYB7 198 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 LINC00301Q8NCQ3 95 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 CLEC4DQ8WXI8 215 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 TBC1D5Q92609 795 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 PGBD1Q96JS3 809 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 YEATS4O95619 227 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 TRAPPC10P48553 1259 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 HERVK_113P62684 666 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 FSTL1Q12841 308 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 CSPP1Q1MSJ5 1256 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 INF2Q27J81 1249 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 RIPK3Q9Y572 518 aa22.73■■□□□ 1.23
CLN3-205ENST00000359984 TMEM88BA6NKF7 163 aa22.72■■□□□ 1.23
CLN3-205ENST00000359984 BTBD19C9JJ37 291 aa22.72■■□□□ 1.23
CLN3-205ENST00000359984 PIK3CDO00329 1044 aa22.72■■□□□ 1.23
CLN3-205ENST00000359984 MUM1L1Q5H9M0 696 aa22.72■■□□□ 1.23
CLN3-205ENST00000359984 TTC38Q5R3I4 469 aa22.72■■□□□ 1.23
CLN3-205ENST00000359984 SNRNP48Q6IEG0 339 aaKnown RBP22.72■■□□□ 1.23
CLN3-205ENST00000359984 MB21D1Q8N884 522 aa22.72■■□□□ 1.23
CLN3-205ENST00000359984 HOMER2Q9NSB8 354 aa22.72■■□□□ 1.23
CLN3-205ENST00000359984 ELP1O95163 1332 aa22.72■■□□□ 1.23
CLN3-205ENST00000359984 NFIBO00712 420 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 CFBP00751 764 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 HOXA13P31271 388 aaPredicted RBP22.71■■□□□ 1.23
CLN3-205ENST00000359984 STK38Q15208 465 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 PTPAQ15257 358 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 TEX2Q8IWB9 1127 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 TBCKQ8TEA7 893 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 TEX13BQ9BXU2 312 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 BTBD7Q9P203 1132 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 ABT1Q9ULW3 272 aaKnown RBP22.71■■□□□ 1.23
CLN3-205ENST00000359984 COL11A1P12107 1806 aaPredicted RBP22.71■■□□□ 1.23
CLN3-205ENST00000359984 PEX10O60683 326 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 GADD45BO75293 160 aaPredicted RBP22.71■■□□□ 1.23
CLN3-205ENST00000359984 SLC39A14Q15043 492 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 TRERF1Q96PN7 1200 aa22.71■■□□□ 1.23
CLN3-205ENST00000359984 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms