RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 NSUN2Q08J23 767 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 CLUL1Q15846 466 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 INTS8Q75QN2 995 aaKnown RBP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 CCDC89Q8N998 374 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 PPP1R36Q96LQ0 422 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 RWDD4Q6NW29 188 aaKnown RBP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 SLC44A5Q8NCS7 719 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 PI4K2BG5E9Z4 385 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 C8orf34Q49A92 452 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 PRPF31Q8WWY3 499 aaKnown RBP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 NFE2L3Q9Y4A8 694 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 WDR46O15213 610 aaKnown RBP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 NMT2O60551 498 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 SPP2Q13103 211 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 PTGDRQ13258 359 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 TCEA2Q15560 299 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 WRNIP1Q96S55 665 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 MYL1P05976 194 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 HHATQ5VTY9 493 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 ZNF341Q9BYN7 854 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 ZBTB40Q9NUA8 1239 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 TRPC5Q9UL62 973 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 FRMD3A2A2Y4 597 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 MCM3P25205 808 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 BLVRAP53004 296 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 POSTNQ15063 836 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 PPP2R5EQ16537 467 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 CCDC14Q49A88 953 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 LIN9Q5TKA1 542 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 PUS7LQ9H0K6 701 aaKnown RBP8.08□□□□□ -1.12
VPS13A-202ENST00000357409 FAM114A2Q9NRY5 505 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 ZNF507Q8TCN5 953 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 SUGT1Q9Y2Z0 365 aa8.08□□□□□ -1.12
VPS13A-202ENST00000357409 ATP2A2P16615 1042 aaKnown RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 SPAG1Q07617 926 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ADCK5Q3MIX3 580 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 TMEM259Q4ZIN3 620 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 CNNM4Q6P4Q7 775 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 CPSF3Q9UKF6 684 aaKnown RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 FAM47DPA6NHR8 397 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ANKRD65E5RJM6 399 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 RPSAP08865 295 aaKnown RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 RBBP5Q15291 538 aaKnown RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 KCTD16Q68DU8 428 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 C8orf74Q6P047 294 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 MTRF1LQ9UGC7 380 aaKnown RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 PCDHA1Q9Y5I3 950 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 PDXDC2PQ6P474 469 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ZBTB8OSQ8IWT0 167 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ZWILCHQ9H900 591 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 RNF19AQ9NV58 838 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 SP100P23497 879 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 VCPP55072 806 aaKnown RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 RASSF7Q02833 373 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 NR5A1Q13285 461 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 KBTBD3Q8NAB2 608 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 RPGRIP1Q96KN7 1286 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 IFNAR2P48551 515 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ANGPTL8Q6UXH0 198 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 TPCN1Q9ULQ1 816 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 SESN3P58005 492 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 SLC9A5Q14940 896 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 MRPL46Q9H2W6 279 aaKnown RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 TMEM260Q9NX78 707 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ANAPC5Q9UJX4 755 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 RFC1P35251 1148 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 SOX5P35711 763 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ADCY8P40145 1251 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 PLCD1P51178 756 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ATN1P54259 1190 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 LRCH2Q5VUJ6 765 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 CDR2LQ86X02 465 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 VSIG1Q86XK7 387 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 CCDC26Q8TAB7 109 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 NPATQ14207 1427 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 PLEKHH1Q9ULM0 1364 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 M0R2C6 588 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 ADAM9Q13443 819 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 TTC31Q49AM3 519 aaPredicted RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 DALRD3Q5D0E6 543 aaKnown RBP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 RFX8Q6ZV50 586 aa8.07□□□□□ -1.12
VPS13A-202ENST00000357409 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS13A-202ENST00000357409 A0A1W2PP64 1363 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 PRDX5P30044 214 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 SLC7A5Q01650 507 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 PEX26Q7Z412 305 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 LCORLQ8N3X6 602 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 DNAAF3Q8N9W5 541 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ELP3Q9H9T3 547 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 CAPN10Q9HC96 672 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 EXOC7Q9UPT5 735 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ODR4Q5SWX8 454 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 SND1Q7KZF4 910 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 ZSCAN10Q96SZ4 725 aaPredicted RBP8.06□□□□□ -1.12
VPS13A-202ENST00000357409 KMT5AQ9NQR1 393 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 GH2P01242 217 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 CIAPIN1Q6FI81 312 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 LCA5Q86VQ0 697 aa8.06□□□□□ -1.12
VPS13A-202ENST00000357409 RNF135Q8IUD6 432 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms