RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 CNTN2Q02246 1040 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 SLC30A10Q6XR72 485 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 HEATR3Q7Z4Q2 680 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 SMCR8Q8TEV9 937 aaPredicted RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 CHURC1Q8WUH1 139 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 ZSCAN31Q96LW9 406 aaPredicted RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 FGD4Q96M96 766 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 UIMC1Q96RL1 719 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 MYH6P13533 1939 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 BTBD18B2RXH4 712 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 M0R2N6 131 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 ICAM1P05362 532 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 SCG2P13521 617 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 SYT1P21579 422 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 INHBEP58166 350 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 TRIM47Q96LD4 638 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 RNF26Q9BY78 433 aaPredicted RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 BCAS3Q9H6U6 928 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 SH2B1Q9NRF2 756 aaPredicted RBP4.66□□□□□ -1.66
LIG4-201ENST00000356922 BARHL2Q9NY43 387 aa4.66□□□□□ -1.66
LIG4-201ENST00000356922 CASP8AP2Q9UKL3 1982 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 COBLO75128 1261 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 UBXN2AP68543 259 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 SSRP1Q08945 709 aaKnown RBP4.65□□□□□ -1.66
LIG4-201ENST00000356922 FERMT3Q86UX7 667 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 TRERF1Q96PN7 1200 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 ALG1Q9BT22 464 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 RBM28Q9NW13 759 aaKnown RBP4.65□□□□□ -1.66
LIG4-201ENST00000356922 CCPG1Q9ULG6 757 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 GABRQQ9UN88 632 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 A0A0G2JMZ2 1700 aa4.65□□□□□ -1.66
LIG4-201ENST00000356922 SMARCA1P28370 1054 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 MCM2P49736 904 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 NBR1Q14596 966 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 FOXD4L6Q3SYB3 417 aaPredicted RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 KRT40Q6A162 431 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 FOXD4L3Q6VB84 417 aaPredicted RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 FAM160B2Q86V87 743 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 FBXO11Q86XK2 927 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 HSCBQ8IWL3 235 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 CYP2W1Q8TAV3 490 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 ZNF296Q8WUU4 475 aaPredicted RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 RRP36Q96EU6 259 aaKnown RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 A1CFQ9NQ94 594 aaKnown RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 FLRT1Q9NZU1 646 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 BIN2Q9UBW5 565 aaPredicted RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 GJD2Q9UKL4 321 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 SLC45A1Q9Y2W3 748 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 RABGAP1Q9Y3P9 1069 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 ATP2A1O14983 1001 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 FOXN1O15353 648 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 HSP90AA1P07900 732 aaKnown RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 OSBPP22059 807 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 RPS6P62753 249 aaKnown RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 SREBF2Q12772 1141 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 BAATQ14032 418 aaPredicted RBP4.65□□□□□ -1.67
LIG4-201ENST00000356922 CCL14Q16627 93 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 NCAPG2Q86XI2 1143 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 GPRC5AQ8NFJ5 357 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 FBXO18Q8NFZ0 1043 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 IL31RAQ8NI17 732 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 GJA10Q969M2 543 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 TAAR1Q96RJ0 339 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 PHF20Q9BVI0 1012 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 TEX13BQ9BXU2 312 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 FTOQ9C0B1 505 aaKnown RBP eCLIP4.65□□□□□ -1.67
LIG4-201ENST00000356922 MORF4L1Q9UBU8 362 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 TELO2Q9Y4R8 837 aa4.65□□□□□ -1.67
LIG4-201ENST00000356922 LCTP09848 1927 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 CCDC196A0A1B0GTZ2 297 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 SMCO2A6NFE2 343 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 DEXIO95424 95 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 CFBP00751 764 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 PPP4R3BQ5MIZ7 849 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 RIOX2Q8IUF8 465 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 TNFRSF25Q93038 417 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 INTS4Q96HW7 963 aaKnown RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 AMNQ9BXJ7 453 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 RNF146Q9NTX7 359 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 CYP39A1Q9NYL5 469 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 MRVI1Q9Y6F6 885 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 XIRP2A4UGR9 3374 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 POTEFA5A3E0 1075 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 SOWAHBA6NEL2 793 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 GPR25O00155 361 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 ZBED4O75132 1171 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 CLK2P49760 499 aaKnown RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 GNAQP50148 359 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 TOB1P50616 345 aaPredicted RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 LACTBP83111 547 aaPredicted RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 TRIM32Q13049 653 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 PPP2R5BQ15173 497 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 FAM110CQ1W6H9 321 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 WDR78Q5VTH9 848 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 JAKMIP3Q5VZ66 844 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 LARP1BQ659C4 914 aaKnown RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 NSMFQ6X4W1 530 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 GPR142Q7Z601 462 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 FCHSD1Q86WN1 690 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 JMYQ8N9B5 988 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms