RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 TTBK2Q6IQ55 1244 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 VTI1AQ96AJ9 217 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 RNPC3Q96LT9 517 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 LNPKQ9C0E8 428 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 TCP11L1Q9NUJ3 509 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 CYP39A1Q9NYL5 469 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 TBX21Q9UL17 535 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 CCPG1Q9ULG6 757 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 DDX49Q9Y6V7 483 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 ZMYM6O95789 1325 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 A0A0U1RQG5 324 aaPredicted RBP17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 ARVCFO00192 962 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 TIMP1P01033 207 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 ICAM1P05362 532 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 TNFAIP2Q03169 654 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 BTNL9Q6UXG8 535 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 TMEM47Q9BQJ4 181 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 RANBP17Q9H2T7 1088 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 SEMA6BQ9H3T3 888 aa17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 GNEQ9Y223 722 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 MYO9BQ13459 2157 aa17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 TRIM6-TRIM34B2RNG4 842 aa17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 TOP1P11387 765 aaKnown RBP17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 SLC16A2P36021 539 aa17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 BEX3Q00994 111 aa17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 NSMFQ6X4W1 530 aa17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 NOL8Q76FK4 1167 aaKnown RBP17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 MYH6P13533 1939 aa17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 CCDC171Q6TFL3 1326 aa17.06■□□□□ 0.32
PRPF40A-201ENST00000354363 UNC80Q8N2C7 3258 aa17.05■□□□□ 0.32
PRPF40A-201ENST00000354363 HAND2P61296 217 aa17.05■□□□□ 0.32
PRPF40A-201ENST00000354363 SYDE2Q5VT97 1194 aa17.05■□□□□ 0.32
PRPF40A-201ENST00000354363 TLK2Q86UE8 772 aa17.05■□□□□ 0.32
PRPF40A-201ENST00000354363 PURBQ96QR8 312 aaKnown RBP17.05■□□□□ 0.32
PRPF40A-201ENST00000354363 CDX2Q99626 313 aaPredicted RBP17.05■□□□□ 0.32
PRPF40A-201ENST00000354363 TTYH1Q9H313 450 aaPredicted RBP17.05■□□□□ 0.32
PRPF40A-201ENST00000354363 PDGFCQ9NRA1 345 aa17.05■□□□□ 0.32
PRPF40A-201ENST00000354363 SMPD1P17405 629 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 PTGS1P23219 599 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 MFSD5Q6N075 450 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 TAPT1Q6NXT6 567 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 FBXO16Q8IX29 292 aaPredicted RBP17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 FAM126BQ8IXS8 530 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 SMC5Q8IY18 1101 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 RILPL2Q969X0 211 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 GPCPD1Q9NPB8 672 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 FRMPD2Q68DX3 1309 aaPredicted RBP17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 EYSQ5T1H1 3165 aa17.04■□□□□ 0.32
PRPF40A-201ENST00000354363 CDH23Q9H251 3354 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 AAMPQ13685 434 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 FSCN1Q16658 493 aaKnown RBP17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 AKNAD1Q5T1N1 836 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 IQSEC1Q6DN90 963 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 EEPD1Q7L9B9 569 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 MORC4Q8TE76 937 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 TLR3O15455 904 aaKnown RBP17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 PDHBP11177 359 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 PCP11498 1178 aaKnown RBP17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 BAATQ14032 418 aaPredicted RBP17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 B4GALNT3Q6L9W6 998 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 CXCL17Q6UXB2 119 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 MFSD6Q6ZSS7 791 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 TBC1D10CQ8IV04 446 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 SLC43A3Q8NBI5 491 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.03■□□□□ 0.323e-14■□□□□ 11.1
PRPF40A-201ENST00000354363 AP5M1Q9H0R1 490 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 RWDD1Q9H446 243 aaPredicted RBP17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 VTA1Q9NP79 307 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 GBF1Q92538 1859 aa17.03■□□□□ 0.32
PRPF40A-201ENST00000354363 NFIBO00712 420 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 DYNC1LI2O43237 492 aaPredicted RBP17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 CABYRO75952 493 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 CD4P01730 458 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 SDSP20132 328 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 PPIGQ13427 754 aaKnown RBP eCLIP17.02■□□□□ 0.319e-10■■□□□ 11.4
PRPF40A-201ENST00000354363 TMEM63BQ5T3F8 832 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 PLEKHM2Q8IWE5 1019 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 TTC14Q96N46 770 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 PPP1R12CQ9BZL4 782 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 Q9Y3F1 56 aa17.02■□□□□ 0.31
PRPF40A-201ENST00000354363 TMEM265A0A087WTH1 108 aa17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 ALDH5A1P51649 535 aaPredicted RBP17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 ZNF543Q08ER8 600 aa17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 TMEM240Q5SV17 173 aa17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 C16orf59Q7L2K0 433 aa17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 CHD1LQ86WJ1 897 aa17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 MYLIPQ8WY64 445 aa17.01■□□□□ 0.31
PRPF40A-201ENST00000354363 CUL9Q8IWT3 2517 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 GRIN2DO15399 1336 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 NEDD4P46934 1319 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 PTPDC1A2A3K4 754 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 ZEB2O60315 1214 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 IGHDP01880 384 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 SNHG28P0DPA3 235 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 CSF2RAP15509 400 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 MFAP1P55081 439 aaKnown RBP17■□□□□ 0.31
PRPF40A-201ENST00000354363 ITGA7Q13683 1181 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 KIAA1211Q6ZU35 1233 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms