RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PKN1Q16512 942 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 TRAPPC3LQ5T215 181 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 ABHD10Q9NUJ1 306 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 TTF2Q9UNY4 1162 aaKnown RBP13.3□□□□□ -0.28
USP1-201ENST00000339950 XDHP47989 1333 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 TDP2O95551 362 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 ERCC5P28715 1186 aaPredicted RBP13.3□□□□□ -0.28
USP1-201ENST00000339950 UBE4AQ14139 1066 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 INTS5Q6P9B9 1019 aaKnown RBP13.3□□□□□ -0.28
USP1-201ENST00000339950 VGLL2Q8N8G2 317 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 NSUN4Q96CB9 384 aaKnown RBP13.3□□□□□ -0.28
USP1-201ENST00000339950 ZC3H12CQ9C0D7 883 aaKnown RBP13.3□□□□□ -0.28
USP1-201ENST00000339950 HSD3B7Q9H2F3 369 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 ADAM21Q9UKJ8 722 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 RGPD2P0DJD1 1756 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 XRN1Q8IZH2 1706 aaKnown RBP13.3□□□□□ -0.28
USP1-201ENST00000339950 TRIM66O15016 1216 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 NR1I3Q14994 352 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 POTEDQ86YR6 584 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 TSG101Q99816 390 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 BPIFA3Q9BQP9 254 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 FHOD1Q9Y613 1164 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 ERVK-24P63145 666 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 AMPD3Q01432 767 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 TAF4BQ92750 862 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 SH2D3AQ9BRG2 576 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 ADD3Q9UEY8 706 aaKnown RBP13.3□□□□□ -0.28
USP1-201ENST00000339950 PCDHB13Q9Y5F0 798 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 USP17L15C9J2P7 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L13C9JLJ4 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L11C9JVI0 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L18D6R9N7 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L22D6RA61 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L17D6RBQ6 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L19D6RCP7 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L20D6RJB6 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 TACC1O75410 805 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 POLR2FP61218 127 aaKnown RBP13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L24Q0WX57 530 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 TTBK2Q6IQ55 1244 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 USP17L6PQ6QN14 398 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 ZNF804AQ7Z570 1209 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 MED15Q96RN5 788 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 ABCC12Q96J65 1359 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 TLDC2A0PJX2 215 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 ERVV-1B6SEH8 477 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 OR52Z1P0C646 297 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 CT47A1Q5JQC4 288 aaPredicted RBP13.29□□□□□ -0.28
USP1-201ENST00000339950 FAM204AQ9H8W3 233 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 DISC1Q9NRI5 854 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 MRFAP1Q9Y605 127 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 ECM2O94769 699 aaPredicted RBP13.29□□□□□ -0.28
USP1-201ENST00000339950 SECISBP2LQ93073 1101 aaKnown RBP13.29□□□□□ -0.28
USP1-201ENST00000339950 HYOU1Q9Y4L1 999 aa13.29□□□□□ -0.28
USP1-201ENST00000339950 PPP1R3GB7ZBB8 358 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 NTSR2O95665 410 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 TUBB4AP04350 444 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 RABGGTAQ92696 567 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 CEP95Q96GE4 821 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 PHF20Q9BVI0 1012 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 L2HGDHQ9H9P8 463 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 PCDHA4Q9UN74 947 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 SAMM50Q9Y512 469 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 LMTK3Q96Q04 1460 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 RFX7Q2KHR2 1363 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 NPHP3-ACAD11A0A0J9YXS1 232 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 FGFR2P21802 821 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 GNA11P29992 359 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 GNAQP50148 359 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 KRT83P78385 493 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 PABPC4Q13310 644 aaKnown RBP eCLIP13.28□□□□□ -0.283e-8■■■□□ 16
USP1-201ENST00000339950 LINC00116Q8NCU8 138 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 CEP89Q96ST8 783 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 MMS19Q96T76 1030 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 GBP3Q9H0R5 595 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 CDHR2Q9BYE9 1310 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 FAM208AQ9UK61 1670 aaKnown RBP13.28□□□□□ -0.28
USP1-201ENST00000339950 FANCGO15287 622 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 GDF11O95390 407 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 ABCB4P21439 1286 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 EIF4A3P38919 411 aaKnown RBP13.28□□□□□ -0.28
USP1-201ENST00000339950 EHHADHQ08426 723 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 CASP8Q14790 479 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 DBNDD1Q9H9R9 158 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 ZNF287Q9HBT7 754 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 KIAA1024Q9UPX6 916 aa13.28□□□□□ -0.28
USP1-201ENST00000339950 CLIC2O15247 247 aa13.27□□□□□ -0.28
USP1-201ENST00000339950 SSR1P43307 286 aaKnown RBP13.27□□□□□ -0.28
USP1-201ENST00000339950 RBM26Q5T8P6 1007 aaKnown RBP13.27□□□□□ -0.28
USP1-201ENST00000339950 ZNF658Q5TYW1 1059 aaPredicted RBP13.27□□□□□ -0.28
USP1-201ENST00000339950 ANKRD40Q6AI12 368 aa13.27□□□□□ -0.28
USP1-201ENST00000339950 TRIML1Q8N9V2 468 aa13.27□□□□□ -0.28
USP1-201ENST00000339950 LACRTQ9GZZ8 138 aa13.27□□□□□ -0.28
USP1-201ENST00000339950 STAT3P40763 770 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 PRR16Q569H4 304 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 NEK8Q86SG6 692 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 RIOK1Q9BRS2 568 aaKnown RBP13.27□□□□□ -0.29
USP1-201ENST00000339950 RAB34Q9BZG1 259 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 NHEJ1Q9H9Q4 299 aaPredicted RBP13.27□□□□□ -0.29
USP1-201ENST00000339950 A0A1B0GTH6 734 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms