RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CCL15-CCL14A0A0B4J2E2 113 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 LIG4P49917 911 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 YWHAEP62258 255 aaKnown RBP11.32□□□□□ -0.6
USP54-201ENST00000339859 DDR1Q08345 913 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 CCL15Q16663 113 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 SUGCTQ9HAC7 445 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 RNF146Q9NTX7 359 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 GSG1L2A8MUP6 293 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 FKBP1AP62942 108 aaKnown RBP11.31□□□□□ -0.6
USP54-201ENST00000339859 TTLL4Q14679 1199 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 NSUN6Q8TEA1 469 aaKnown RBP11.31□□□□□ -0.6
USP54-201ENST00000339859 MYSM1Q5VVJ2 828 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 TBC1D10CQ8IV04 446 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 NEDD1Q8NHV4 660 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 MAGEF1Q9HAY2 307 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 PODXL2Q9NZ53 605 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 LRSAM1Q6UWE0 723 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 DYMQ7RTS9 669 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 SMC1BQ8NDV3 1235 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 ZSCAN20P17040 1043 aaPredicted RBP11.31□□□□□ -0.6
USP54-201ENST00000339859 JAK3P52333 1124 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 SNAP25P60880 206 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 SCYL3Q8IZE3 742 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 GBA2Q9HCG7 927 aaPredicted RBP11.31□□□□□ -0.6
USP54-201ENST00000339859 GPR75-ASB3A0A0A6YYF3 556 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 STAT3P40763 770 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 RFX5P48382 616 aaPredicted RBP11.31□□□□□ -0.6
USP54-201ENST00000339859 COG2Q14746 738 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 ABI1Q8IZP0 508 aa11.31□□□□□ -0.6
USP54-201ENST00000339859 FAM177A1Q8N128 213 aaPredicted RBP11.31□□□□□ -0.6
USP54-201ENST00000339859 F5H6K3 240 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 IL1R1P14778 569 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 KLRC3Q07444 240 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 ZSCAN23Q3MJ62 389 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 K7ENM7 598 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 IFNAR1P17181 557 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 CYLC1P35663 651 aaPredicted RBP11.3□□□□□ -0.6
USP54-201ENST00000339859 EEPD1Q7L9B9 569 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 SLC7A3Q8WY07 619 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 AK8Q96MA6 479 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 LRRC4BQ9NT99 713 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 KRT5P13647 590 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 EIF2AK2P19525 551 aaKnown RBP11.3□□□□□ -0.6
USP54-201ENST00000339859 PRPHP41219 470 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 FCGRTP55899 365 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 UBXN1Q04323 297 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 KCNV1Q6PIU1 500 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 ZDHHC15Q96MV8 337 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 ANO3Q9BYT9 981 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 KIF2AO00139 706 aaPredicted RBP11.3□□□□□ -0.6
USP54-201ENST00000339859 AKR1B1P15121 316 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 AOPEPQ8N6M6 819 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 RNF169Q8NCN4 708 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 TBCKQ8TEA7 893 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 FAM167AQ96KS9 214 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 PLVAPQ9BX97 442 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 SLIT2O94813 1529 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 XPOTO43592 962 aaKnown RBP11.3□□□□□ -0.6
USP54-201ENST00000339859 EXOC3O60645 756 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 GNA14O95837 355 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 ADCK5Q3MIX3 580 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 C16orf86Q6ZW13 317 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 TMTC3Q6ZXV5 915 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 CCDC155Q8N6L0 562 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 RPS6KC1Q96S38 1066 aa11.3□□□□□ -0.6
USP54-201ENST00000339859 MYCP01106 439 aaPredicted RBP11.29□□□□□ -0.6
USP54-201ENST00000339859 TNNC2P02585 160 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 NOP2P46087 812 aaKnown RBP11.29□□□□□ -0.6
USP54-201ENST00000339859 ZNF354CQ86Y25 554 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 SLC44A5Q8NCS7 719 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 EHBP1Q8NDI1 1231 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 NYAP2Q9P242 653 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 COL4A3BPQ9Y5P4 624 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 LMO7Q8WWI1 1683 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 SLC25A27O95847 323 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 SPDYE2BA6NHP3 402 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 SPDYE6P0CI01 402 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 CXCL9Q07325 125 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 PAK1Q13153 545 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 LEO1Q8WVC0 666 aaPredicted RBP11.29□□□□□ -0.6
USP54-201ENST00000339859 RMDN3Q96TC7 470 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 TMEM39BQ9GZU3 492 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 RGPD8O14715 1765 aaPredicted RBP11.29□□□□□ -0.6
USP54-201ENST00000339859 HOXA10P31260 410 aaPredicted RBP11.29□□□□□ -0.6
USP54-201ENST00000339859 NEDD9Q14511 834 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 NECTIN1Q15223 517 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 UBE2SQ16763 222 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 SPECC1Q5M775 1068 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 NACC1Q96RE7 527 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 PANK4Q9NVE7 773 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 AKR1B10O60218 316 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 KRT19P08727 400 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 RFX1P22670 979 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 TM4SF1P30408 202 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 POSTNQ15063 836 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 FAM200AQ8TCP9 573 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 CTNNBL1Q8WYA6 563 aaPredicted RBP11.29□□□□□ -0.6
USP54-201ENST00000339859 CUEDC2Q9H467 287 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 PCDHA6Q9UN73 950 aa11.29□□□□□ -0.6
USP54-201ENST00000339859 PCDHA8Q9Y5H6 950 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms