RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CCDC93Q567U6 631 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 ANKRD13CQ8N6S4 541 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 SPATS2LQ9NUQ6 558 aaKnown RBP13.81□□□□□ -0.2
SDC3-201ENST00000336798 BAG5Q9UL15 447 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 NUB1Q9Y5A7 615 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 PCDHB4Q9Y5E5 795 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 ARHGAP6O43182 974 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 KIF11P52732 1056 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 EEPD1Q7L9B9 569 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 SGK1O00141 431 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 TLR3O15455 904 aaKnown RBP13.81□□□□□ -0.2
SDC3-201ENST00000336798 MGEA5O60502 916 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 S100BP04271 92 aaPredicted RBP13.81□□□□□ -0.2
SDC3-201ENST00000336798 INPP1P49441 399 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 ICA1Q05084 483 aa13.81□□□□□ -0.2
SDC3-201ENST00000336798 ZNF277Q9NRM2 450 aaPredicted RBP13.81□□□□□ -0.2
SDC3-201ENST00000336798 TSC1Q92574 1164 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 COG7P83436 770 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 CDC26Q8NHZ8 85 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 ALKBH8Q96BT7 664 aaKnown RBP13.8□□□□□ -0.2
SDC3-201ENST00000336798 RMDN2Q96LZ7 410 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 TSKSQ9UJT2 592 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 KLRF2D3W0D1 207 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 GNA14O95837 355 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 ATF2P15336 505 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 OSTNP61366 133 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 DYNLT1P63172 113 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 DBN1Q16643 649 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 MYSM1Q5VVJ2 828 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 ATP6V1E2Q96A05 226 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 MRPL11Q9Y3B7 192 aaKnown RBP13.8□□□□□ -0.2
SDC3-201ENST00000336798 KCTD1Q719H9 257 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 CCDC84Q86UT8 332 aaPredicted RBP13.8□□□□□ -0.2
SDC3-201ENST00000336798 GBP5Q96PP8 586 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 NCAPGQ9BPX3 1015 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 GOLGA8FQ08AF8 430 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 GOLGA8DPQ0D2H9 430 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 ADAM9Q13443 819 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 RCN2Q14257 317 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 MESDQ14696 234 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 RSRC2Q7L4I2 434 aaKnown RBP13.8□□□□□ -0.2
SDC3-201ENST00000336798 IFNL3Q8IZI9 196 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 SPDYE1Q8NFV5 336 aaPredicted RBP13.8□□□□□ -0.2
SDC3-201ENST00000336798 ZNF496Q96IT1 587 aaPredicted RBP13.8□□□□□ -0.2
SDC3-201ENST00000336798 IMPACTQ9P2X3 320 aa13.8□□□□□ -0.2
SDC3-201ENST00000336798 ADD1P35611 737 aaKnown RBP13.79□□□□□ -0.2
SDC3-201ENST00000336798 BAG6P46379 1132 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 RNASELQ05823 741 aaKnown RBP13.79□□□□□ -0.2
SDC3-201ENST00000336798 PNMA1Q8ND90 353 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 CFAP61Q8NHU2 1237 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 HVCN1Q96D96 273 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 LRFN2Q9ULH4 789 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 INPP5FQ9Y2H2 1132 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 ZBTB33Q86T24 672 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 TBC1D22AQ8WUA7 517 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 PCIF1Q9H4Z3 704 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 ARMCX3Q9UH62 379 aaPredicted RBP13.79□□□□□ -0.2
SDC3-201ENST00000336798 KCNQ3O43525 872 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 TUBB2AQ13885 445 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 GRK7Q8WTQ7 553 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 TUBB2BQ9BVA1 445 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 RINT1Q6NUQ1 792 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 CCNYQ8ND76 341 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 TSPYL2Q9H2G4 693 aaPredicted RBP13.79□□□□□ -0.2
SDC3-201ENST00000336798 TRPM2O94759 1503 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 CDR2Q01850 454 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 TNFAIP1Q13829 316 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 KLHL14Q9P2G3 628 aa13.79□□□□□ -0.2
SDC3-201ENST00000336798 PRPSAP1Q14558 356 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 PI4K2BQ8TCG2 481 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 HAUS1Q96CS2 278 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 CAPN7Q9Y6W3 813 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 SBNO1A3KN83 1393 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 FAM149B1Q96BN6 582 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 LRGUKQ96M69 825 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 RIPOR2Q9Y4F9 1068 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 GRIN2AQ12879 1464 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 PTH1RQ03431 593 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 C7orf31Q8N865 590 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 CDCA7Q9BWT1 371 aaPredicted RBP13.78□□□□□ -0.2
SDC3-201ENST00000336798 GOLGA8SH3BPF8 625 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 MYL7Q01449 175 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 RASSF7Q02833 373 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 ZSCAN26Q16670 478 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 LRRC24Q50LG9 513 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 FAM182BQ5T319 152 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 SLFN13Q68D06 897 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 XAB2Q9HCS7 855 aaKnown RBP13.78□□□□□ -0.2
SDC3-201ENST00000336798 TPX2Q9ULW0 747 aaKnown RBP13.78□□□□□ -0.2
SDC3-201ENST00000336798 KIAA1024Q9UPX6 916 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 USH1CQ9Y6N9 552 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 STK25O00506 426 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 OR52Z1P0C646 297 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 TTLL7Q6ZT98 887 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 PDZD4Q76G19 769 aaPredicted RBP13.78□□□□□ -0.2
SDC3-201ENST00000336798 G3BP2Q9UN86 482 aaKnown RBP13.78□□□□□ -0.2
SDC3-201ENST00000336798 TNKSO95271 1327 aa13.78□□□□□ -0.2
SDC3-201ENST00000336798 THOC2Q8NI27 1593 aaKnown RBP13.77□□□□□ -0.2
SDC3-201ENST00000336798 A0A0D9SFI3 127 aa13.77□□□□□ -0.2
SDC3-201ENST00000336798 GDF11O95390 407 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms