RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 NMRK2Q9NPI5 230 aa17.04■□□□□ 0.32
CCDC88C-202ENST00000334448 GOLGA6L4A6NEF3 574 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L15C9J2P7 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L13C9JLJ4 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L11C9JVI0 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L18D6R9N7 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L22D6RA61 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L17D6RBQ6 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L19D6RCP7 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L20D6RJB6 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 MEIS2O14770 477 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 ATP2A1O14983 1001 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 CUTAO60888 179 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 FLOT1O75955 427 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 FOSP01100 380 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 PTPREP23469 700 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 HOXA7P31268 230 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 DSG3P32926 999 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 ATP2C1P98194 919 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 USP17L24Q0WX57 530 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 DGKZQ13574 1117 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 ZNF579Q8NAF0 562 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 REPS2Q8NFH8 660 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 CLMNQ96JQ2 1002 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 ELP3Q9H9T3 547 aa17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 MRPL11Q9Y3B7 192 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-202ENST00000334448 TRAF5O00463 557 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 LAD1O00515 517 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 VWA5AO00534 786 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 WNT7AO00755 349 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 CMA1P23946 247 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 COG2Q14746 738 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 ARL6IP4Q66PJ3 421 aaKnown RBP17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 MOB2Q70IA6 237 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 NEK8Q86SG6 692 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 KRI1Q8N9T8 703 aaKnown RBP17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 CRYGNQ8WXF5 182 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 SYAP1Q96A49 352 aaPredicted RBP17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 FERMT2Q96AC1 680 aa17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 NAP1L4Q99733 375 aaKnown RBP17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 FBXO2Q9UK22 296 aaPredicted RBP17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 SRPRBQ9Y5M8 271 aaKnown RBP17.02■□□□□ 0.32
CCDC88C-202ENST00000334448 PARP14Q460N5 1801 aa17.02■□□□□ 0.31
CCDC88C-202ENST00000334448 RLFQ13129 1914 aa17.02■□□□□ 0.31
CCDC88C-202ENST00000334448 IRF6O14896 467 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 ZBED4O75132 1171 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 SNAP25P60880 206 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 TTLL12Q14166 644 aaPredicted RBP17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 INF2Q27J81 1249 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 CHADLQ6NUI6 762 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 MOXD1Q6UVY6 613 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 LBX2Q6XYB7 198 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 C4orf32Q8N8J7 132 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 CNKSR2Q8WXI2 1034 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 MRPS27Q92552 414 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 DDX19AQ9NUU7 478 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 MAP3K20Q9NYL2 800 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 BIN2Q9UBW5 565 aaPredicted RBP17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 PTPRFP10586 1907 aa17.01■□□□□ 0.31
CCDC88C-202ENST00000334448 ITGBL1O95965 494 aaPredicted RBP17■□□□□ 0.31
CCDC88C-202ENST00000334448 GCFC2P16383 781 aaKnown RBP17■□□□□ 0.31
CCDC88C-202ENST00000334448 PRPHP41219 470 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 MOGSQ13724 837 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 USH1GQ495M9 461 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 JAKMIP3Q5VZ66 844 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 PPP4R3AQ6IN85 833 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 ENGASEQ8NFI3 743 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 TBCKQ8TEA7 893 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 OPTNQ96CV9 577 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 OTUD5Q96G74 571 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 MBOAT7Q96N66 472 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 GBA2Q9HCG7 927 aaPredicted RBP17■□□□□ 0.31
CCDC88C-202ENST00000334448 TMEM260Q9NX78 707 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 HOXC10Q9NYD6 342 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 TMEM63CQ9P1W3 806 aa17■□□□□ 0.31
CCDC88C-202ENST00000334448 A0A0G2JMZ2 1700 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 EDIL3O43854 480 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 LIG1P18858 919 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 MARCKSP29966 332 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 SREBF1P36956 1147 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 USP11P51784 963 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 FAM160A1Q05DH4 1040 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 UBE2SQ16763 222 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 TKFCQ3LXA3 575 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 CCDC183Q5T5S1 534 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 RESP18Q5W5W9 173 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 CAVIN1Q6NZI2 390 aaKnown RBP16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 CCDC174Q6PII3 467 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 FASTKD5Q7L8L6 764 aaKnown RBP16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 MB21D1Q8N884 522 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 CLEC4DQ8WXI8 215 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 ATG4CQ96DT6 458 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 ANO3Q9BYT9 981 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 ZNF214Q9UL59 606 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 CCPG1Q9ULG6 757 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 AGTPBP1Q9UPW5 1226 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 HPSEQ9Y251 543 aa16.99■□□□□ 0.31
CCDC88C-202ENST00000334448 CYP3A7-CYP3A51PA0A087WV96 503 aa16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 SPDYE16A6NNV3 312 aaPredicted RBP16.98■□□□□ 0.31
CCDC88C-202ENST00000334448 CYP3A7P24462 503 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms