RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 DPP8Q6V1X1 898 aaPredicted RBP16.39■□□□□ 0.21
TPM3-206ENST00000330188 KRT27Q7Z3Y8 459 aa16.39■□□□□ 0.21
TPM3-206ENST00000330188 GIMAP8Q8ND71 665 aaPredicted RBP16.39■□□□□ 0.21
TPM3-206ENST00000330188 TMEM260Q9NX78 707 aa16.39■□□□□ 0.21
TPM3-206ENST00000330188 TTF2Q9UNY4 1162 aaKnown RBP16.39■□□□□ 0.21
TPM3-206ENST00000330188 GREB1LQ9C091 1923 aaPredicted RBP16.38■□□□□ 0.21
TPM3-206ENST00000330188 C10orf71Q711Q0 1435 aa16.38■□□□□ 0.21
TPM3-206ENST00000330188 COL11A2P13942 1736 aaPredicted RBP16.38■□□□□ 0.21
TPM3-206ENST00000330188 SRGNP10124 158 aa16.38■□□□□ 0.21
TPM3-206ENST00000330188 CASQ1P31415 396 aa16.38■□□□□ 0.21
TPM3-206ENST00000330188 CLEC10AQ8IUN9 316 aa16.38■□□□□ 0.21
TPM3-206ENST00000330188 KIFC2Q96AC6 838 aa16.38■□□□□ 0.21
TPM3-206ENST00000330188 MXD3Q9BW11 206 aa16.38■□□□□ 0.21
TPM3-206ENST00000330188 ZC3H12CQ9C0D7 883 aaKnown RBP16.38■□□□□ 0.21
TPM3-206ENST00000330188 TPM1P09493 284 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 TECP42680 631 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 EIF6P56537 245 aaKnown RBP16.37■□□□□ 0.21
TPM3-206ENST00000330188 POTEDQ86YR6 584 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 COA7Q96BR5 231 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 MMTAG2Q9BU76 263 aaKnown RBP16.37■□□□□ 0.21
TPM3-206ENST00000330188 USP40Q9NVE5 1235 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 MYH4Q9Y623 1939 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 MYO3BQ8WXR4 1341 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 RNF225M0QZC1 329 aaPredicted RBP16.37■□□□□ 0.21
TPM3-206ENST00000330188 STIM1Q13586 685 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 TRIM14Q14142 442 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 DOK7Q18PE1 504 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 TRIM9Q9C026 710 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 SWAP70Q9UH65 585 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 SERPINB13Q9UIV8 391 aa16.37■□□□□ 0.21
TPM3-206ENST00000330188 DDX41Q9UJV9 622 aaKnown RBP16.37■□□□□ 0.21
TPM3-206ENST00000330188 TTLL1O95922 423 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 NPR1P16066 1061 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 SHMT1P34896 483 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 SCNN1DP51172 638 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 CREBRFQ8IUR6 639 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 C7orf25Q9BPX7 421 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 THAP9Q9H5L6 903 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 GPCPD1Q9NPB8 672 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 ABHD10Q9NUJ1 306 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 OGFRQ9NZT2 677 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 PSMA7O14818 248 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 EDIL3O43854 480 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 TADA3O75528 432 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 H2AFXP16104 143 aaPredicted RBP16.36■□□□□ 0.21
TPM3-206ENST00000330188 ADCY7P51828 1080 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 MAP3K9P80192 1104 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 UBXN1Q04323 297 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 ZNF543Q08ER8 600 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 TTI2Q6NXR4 508 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 SMAP1Q8IYB5 467 aaPredicted RBP16.36■□□□□ 0.21
TPM3-206ENST00000330188 MTMR9Q96QG7 549 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 CARD6Q9BX69 1037 aa16.36■□□□□ 0.21
TPM3-206ENST00000330188 A0A0U1RQJ8 604 aa16.35■□□□□ 0.21
TPM3-206ENST00000330188 EEF1GP26641 437 aaKnown RBP16.35■□□□□ 0.21
TPM3-206ENST00000330188 ERVK-24P63145 666 aa16.35■□□□□ 0.21
TPM3-206ENST00000330188 CDC42EP5Q6NZY7 148 aa16.35■□□□□ 0.21
TPM3-206ENST00000330188 HHIPL2Q6UWX4 724 aa16.35■□□□□ 0.21
TPM3-206ENST00000330188 MNS1Q8NEH6 495 aa16.35■□□□□ 0.21
TPM3-206ENST00000330188 ATRIPQ8WXE1 791 aa16.35■□□□□ 0.21
TPM3-206ENST00000330188 DHTKD1Q96HY7 919 aaPredicted RBP16.35■□□□□ 0.21
TPM3-206ENST00000330188 TRIM47Q96LD4 638 aa16.35■□□□□ 0.21
TPM3-206ENST00000330188 MRFAP1Q9Y605 127 aa16.35■□□□□ 0.21
TPM3-206ENST00000330188 LGALS16A8MUM7 142 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 PPP4R3CPQ6ZMV5 832 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 TMTC1Q8IUR5 882 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 NUP88Q99567 741 aaPredicted RBP16.34■□□□□ 0.21
TPM3-206ENST00000330188 DUSP9Q99956 384 aaKnown RBP16.34■□□□□ 0.21
TPM3-206ENST00000330188 JMJD4Q9H9V9 463 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 LZTFL1Q9NQ48 299 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 EXOC1Q9NV70 894 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 SLC37A4O43826 429 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 TXKP42681 527 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 ASIC1P78348 528 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 PDE4DQ08499 809 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 CALCRLQ16602 461 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 ARHGAP29Q52LW3 1261 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 APOBEC3HQ6NTF7 200 aaKnown RBP16.34■□□□□ 0.21
TPM3-206ENST00000330188 COL23A1Q86Y22 540 aaPredicted RBP16.34■□□□□ 0.21
TPM3-206ENST00000330188 ADGRF4Q8IZF3 695 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 NLGN1Q8N2Q7 840 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 MB21D1Q8N884 522 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 ZNF507Q8TCN5 953 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 CCDC47Q96A33 483 aaKnown RBP16.34■□□□□ 0.21
TPM3-206ENST00000330188 IRX2Q9BZI1 471 aaPredicted RBP16.34■□□□□ 0.21
TPM3-206ENST00000330188 SIPA1L1O43166 1804 aa16.34■□□□□ 0.21
TPM3-206ENST00000330188 PNMA6FA0A0J9YX94 578 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 EFCAB8A8MWE9 144 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 PPP1R11O60927 126 aaPredicted RBP16.33■□□□□ 0.21
TPM3-206ENST00000330188 TDP2O95551 362 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 ALDH1B1P30837 517 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 FXR2P51116 673 aaKnown RBP eCLIP16.33■□□□□ 0.212e-6■■■□□ 15.5
TPM3-206ENST00000330188 STK4Q13043 487 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 GRB10Q13322 594 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 PPP1R18Q6NYC8 613 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 NOC3LQ8WTT2 800 aaKnown RBP16.33■□□□□ 0.21
TPM3-206ENST00000330188 UBXN4Q92575 508 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 TEKT1Q969V4 418 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 CALML4Q96GE6 196 aa16.33■□□□□ 0.21
TPM3-206ENST00000330188 A0A1W2PQC6 194 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms