RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 FAM184AQ8NB25 1140 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 LLPHQ9BRT6 129 aaKnown RBP20.96■□□□□ 0.95
HMGA1-201ENST00000311487 BEGAINQ9BUH8 593 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 ZCCHC17Q9NP64 241 aaKnown RBP20.96■□□□□ 0.95
HMGA1-201ENST00000311487 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.96■□□□□ 0.95
HMGA1-201ENST00000311487 BCRP11274 1271 aa20.95■□□□□ 0.94
HMGA1-201ENST00000311487 NAPAP54920 295 aa20.95■□□□□ 0.94
HMGA1-201ENST00000311487 CAP1Q01518 475 aa20.95■□□□□ 0.94
HMGA1-201ENST00000311487 MAP2K1Q02750 393 aaPredicted RBP20.95■□□□□ 0.94
HMGA1-201ENST00000311487 PURBQ96QR8 312 aaKnown RBP20.95■□□□□ 0.94
HMGA1-201ENST00000311487 STXBP3O00186 592 aa20.94■□□□□ 0.94
HMGA1-201ENST00000311487 CCAR1Q8IX12 1150 aaKnown RBP20.94■□□□□ 0.94
HMGA1-201ENST00000311487 RNF146Q9NTX7 359 aa20.94■□□□□ 0.94
HMGA1-201ENST00000311487 CTGFP29279 349 aa20.94■□□□□ 0.94
HMGA1-201ENST00000311487 HOXA13P31271 388 aaPredicted RBP20.94■□□□□ 0.94
HMGA1-201ENST00000311487 OPLAHO14841 1288 aa20.93■□□□□ 0.94
HMGA1-201ENST00000311487 FAM110CQ1W6H9 321 aa20.93■□□□□ 0.94
HMGA1-201ENST00000311487 NSMFQ6X4W1 530 aa20.93■□□□□ 0.94
HMGA1-201ENST00000311487 WBP1LQ9NX94 342 aa20.93■□□□□ 0.94
HMGA1-201ENST00000311487 BARHL2Q9NY43 387 aa20.93■□□□□ 0.94
HMGA1-201ENST00000311487 A0A0G2JMZ2 1700 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 CFBP00751 764 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 RIOX2Q8IUF8 465 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 CLEC4DQ8WXI8 215 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 CWC22Q9HCG8 908 aaKnown RBP20.92■□□□□ 0.94
HMGA1-201ENST00000311487 MORF4L1Q9UBU8 362 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 DDX49Q9Y6V7 483 aaKnown RBP20.92■□□□□ 0.94
HMGA1-201ENST00000311487 THSD7BQ9C0I4 1608 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 SMCO2A6NFE2 343 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 UBE2SQ16763 222 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 USP17L6PQ6QN14 398 aa20.92■□□□□ 0.94
HMGA1-201ENST00000311487 STK36Q9NRP7 1315 aa20.91■□□□□ 0.94
HMGA1-201ENST00000311487 ZSWIM8A7E2V4 1837 aa20.91■□□□□ 0.94
HMGA1-201ENST00000311487 ATP2A1O14983 1001 aa20.91■□□□□ 0.94
HMGA1-201ENST00000311487 PGK2P07205 417 aa20.91■□□□□ 0.94
HMGA1-201ENST00000311487 FDX1P10109 184 aa20.91■□□□□ 0.94
HMGA1-201ENST00000311487 OAZ1P54368 228 aa20.91■□□□□ 0.94
HMGA1-201ENST00000311487 HMGN5P82970 282 aaKnown RBP20.91■□□□□ 0.94
HMGA1-201ENST00000311487 FOXD4L5Q5VV16 416 aaPredicted RBP20.91■□□□□ 0.94
HMGA1-201ENST00000311487 RASGRP4Q8TDF6 673 aa20.91■□□□□ 0.94
HMGA1-201ENST00000311487 FOXD4L4Q8WXT5 416 aaPredicted RBP20.91■□□□□ 0.94
HMGA1-201ENST00000311487 NLRP5P59047 1200 aa20.9■□□□□ 0.94
HMGA1-201ENST00000311487 INTS4Q96HW7 963 aaKnown RBP20.9■□□□□ 0.94
HMGA1-201ENST00000311487 PGBD1Q96JS3 809 aa20.9■□□□□ 0.94
HMGA1-201ENST00000311487 GPR25O00155 361 aa20.9■□□□□ 0.94
HMGA1-201ENST00000311487 CALML3P27482 149 aa20.9■□□□□ 0.94
HMGA1-201ENST00000311487 LARP1BQ659C4 914 aaKnown RBP20.9■□□□□ 0.94
HMGA1-201ENST00000311487 OXER1Q8TDS5 423 aa20.9■□□□□ 0.94
HMGA1-201ENST00000311487 GTF3C2Q8WUA4 911 aaPredicted RBP20.9■□□□□ 0.94
HMGA1-201ENST00000311487 C8orf76Q96K31 380 aa20.9■□□□□ 0.94
HMGA1-201ENST00000311487 PSTPIP2Q9H939 334 aa20.9■□□□□ 0.94
HMGA1-201ENST00000311487 TMEM260Q9NX78 707 aa20.9■□□□□ 0.94
HMGA1-201ENST00000311487 BIN2Q9UBW5 565 aaPredicted RBP20.9■□□□□ 0.94
HMGA1-201ENST00000311487 CCNA1P78396 465 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 SP3Q02447 781 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 PKP1Q13835 747 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 KRT40Q6A162 431 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 SLC30A10Q6XR72 485 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 GPR142Q7Z601 462 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 FCHSD1Q86WN1 690 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 ANKRD35Q8N283 1001 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 CD99L2Q8TCZ2 262 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 ZNF296Q8WUU4 475 aaPredicted RBP20.89■□□□□ 0.93
HMGA1-201ENST00000311487 RBM27Q9P2N5 1060 aaKnown RBP20.89■□□□□ 0.93
HMGA1-201ENST00000311487 MRPL11Q9Y3B7 192 aaKnown RBP20.89■□□□□ 0.93
HMGA1-201ENST00000311487 HTTP42858 3142 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 ABCB11O95342 1321 aa20.89■□□□□ 0.93
HMGA1-201ENST00000311487 PSMC4P43686 418 aa20.88■□□□□ 0.93
HMGA1-201ENST00000311487 LACTBP83111 547 aaPredicted RBP20.88■□□□□ 0.93
HMGA1-201ENST00000311487 BAATQ14032 418 aaPredicted RBP20.88■□□□□ 0.93
HMGA1-201ENST00000311487 NOM1Q5C9Z4 860 aaKnown RBP20.88■□□□□ 0.93
HMGA1-201ENST00000311487 WASF1Q92558 559 aa20.88■□□□□ 0.93
HMGA1-201ENST00000311487 ACAD9Q9H845 621 aa20.88■□□□□ 0.93
HMGA1-201ENST00000311487 A1CFQ9NQ94 594 aaKnown RBP20.88■□□□□ 0.93
HMGA1-201ENST00000311487 TRIM47Q96LD4 638 aa20.88■□□□□ 0.93
HMGA1-201ENST00000311487 DOCK3Q8IZD9 2030 aa20.87■□□□□ 0.93
HMGA1-201ENST00000311487 VPS37CA5D8V6 355 aaPredicted RBP20.87■□□□□ 0.93
HMGA1-201ENST00000311487 RPS6P62753 249 aaKnown RBP20.87■□□□□ 0.93
HMGA1-201ENST00000311487 UBXN2AP68543 259 aa20.87■□□□□ 0.93
HMGA1-201ENST00000311487 CNTN2Q02246 1040 aa20.87■□□□□ 0.93
HMGA1-201ENST00000311487 JAKMIP3Q5VZ66 844 aa20.87■□□□□ 0.93
HMGA1-201ENST00000311487 ZFP91Q96JP5 570 aaPredicted RBP20.87■□□□□ 0.93
HMGA1-201ENST00000311487 MMP19Q99542 508 aa20.87■□□□□ 0.93
HMGA1-201ENST00000311487 COL20A1Q9P218 1284 aa20.87■□□□□ 0.93
HMGA1-201ENST00000311487 BRCA2P51587 3418 aa20.87■□□□□ 0.93
HMGA1-201ENST00000311487 FOXN1O15353 648 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 SLC25A27O95847 323 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 SYT1P21579 422 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 ADCY7P51828 1080 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 NR5A1Q13285 461 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 TRIM29Q14134 588 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 MCTP1Q6DN14 999 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 RNF207Q6ZRF8 634 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 PHF20Q9BVI0 1012 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 H3BQV1 296 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 MEIS2O14770 477 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 TNPO2O14787 897 aaKnown RBP20.86■□□□□ 0.93
HMGA1-201ENST00000311487 NPY5RQ15761 445 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 IFFO2Q5TF58 517 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 CHST13Q8NET6 341 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms