RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 MYCNP04198 464 aaPredicted RBP7.58□□□□□ -1.2
CD44-204ENST00000279452 XRCC5P13010 732 aaKnown RBP7.58□□□□□ -1.2
CD44-204ENST00000279452 CYP2C19P33261 490 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 GNAQP50148 359 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 METAP2P50579 478 aaKnown RBP eCLIP7.58□□□□□ -1.2
CD44-204ENST00000279452 EXOSC10Q01780 885 aaKnown RBP7.58□□□□□ -1.2
CD44-204ENST00000279452 RTN1Q16799 776 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 C8orf34Q49A92 452 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 APOA5Q6Q788 366 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 RUFY3Q7L099 469 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 KCNB2Q92953 911 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 RRP36Q96EU6 259 aaKnown RBP7.58□□□□□ -1.2
CD44-204ENST00000279452 MAML3Q96JK9 1138 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 DEFB118Q96PH6 123 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 AMNQ9BXJ7 453 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.58□□□□□ -1.2
CD44-204ENST00000279452 UNC93B1Q9H1C4 597 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 JMJD4Q9H9V9 463 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 HMX1Q9NP08 348 aaPredicted RBP7.58□□□□□ -1.2
CD44-204ENST00000279452 A1CFQ9NQ94 594 aaKnown RBP7.58□□□□□ -1.2
CD44-204ENST00000279452 PDRG1Q9NUG6 133 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 RBM28Q9NW13 759 aaKnown RBP7.58□□□□□ -1.2
CD44-204ENST00000279452 FLRT1Q9NZU1 646 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 BRPF3Q9ULD4 1205 aa7.58□□□□□ -1.2
CD44-204ENST00000279452 PLXNB2O15031 1838 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 COL11A1P12107 1806 aaPredicted RBP7.57□□□□□ -1.2
CD44-204ENST00000279452 PARP14Q460N5 1801 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 RLFQ13129 1914 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 hCG_1642624A0A1W2PR95 340 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 POTEFA5A3E0 1075 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 CFBP00751 764 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 CNTN2Q02246 1040 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 CACNB2Q08289 660 aaPredicted RBP7.57□□□□□ -1.2
CD44-204ENST00000279452 STK3Q13188 491 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 BAATQ14032 418 aaPredicted RBP7.57□□□□□ -1.2
CD44-204ENST00000279452 IFFO2Q5TF58 517 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 SLC30A10Q6XR72 485 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 RNF207Q6ZRF8 634 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 HEATR3Q7Z4Q2 680 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 SGMS1Q86VZ5 419 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 FANCBQ8NB91 859 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 USP6NLQ92738 828 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 LZTS2Q9BRK4 669 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 LARP6Q9BRS8 491 aaKnown RBP7.57□□□□□ -1.2
CD44-204ENST00000279452 ZSWIM6Q9HCJ5 1215 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 ZHX1Q9UKY1 873 aaPredicted RBP7.57□□□□□ -1.2
CD44-204ENST00000279452 CNPY2Q9Y2B0 182 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 MRPL11Q9Y3B7 192 aaKnown RBP7.57□□□□□ -1.2
CD44-204ENST00000279452 PCDHA1Q9Y5I3 950 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 PCNTO95613 3336 aa7.57□□□□□ -1.2
CD44-204ENST00000279452 RPTORQ8N122 1335 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 PNMA6FA0A0J9YX94 578 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 CCDC196A0A1B0GTZ2 297 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 CPLX1O14810 134 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 PPFIA3O75145 1194 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 TFRCP02786 760 aaKnown RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 HOXC6P09630 235 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 CCND3P30281 292 aaPredicted RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 ANAPC15P60006 121 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 CCT2P78371 535 aaKnown RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 AKAP17AQ02040 695 aaKnown RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 TRAF1Q13077 416 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 ZNF792Q3KQV3 632 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 PRAMEF19Q5SWL8 479 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 ANO1Q5XXA6 986 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 OLFML2BQ68BL8 750 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 TMTC3Q6ZXV5 915 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 MCF2L2Q86YR7 1114 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 SRBD1Q8N5C6 995 aaKnown RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 U2AF1L4Q8WU68 220 aaKnown RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 PURBQ96QR8 312 aaKnown RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 MPHOSPH6Q99547 160 aaKnown RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 MAP3K14Q99558 947 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 TINF2Q9BSI4 451 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 SPZ1Q9BXG8 430 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 RIOX1Q9H6W3 641 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 CYP39A1Q9NYL5 469 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 ADD3Q9UEY8 706 aaKnown RBP7.56□□□□□ -1.2
CD44-204ENST00000279452 ZNF236Q9UL36 1845 aa7.56□□□□□ -1.2
CD44-204ENST00000279452 ASB14A6NK59 587 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 CYTH3O43739 400 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 PPP1R11O60927 126 aaPredicted RBP7.55□□□□□ -1.2
CD44-204ENST00000279452 EN2P19622 333 aaPredicted RBP7.55□□□□□ -1.2
CD44-204ENST00000279452 NEK4P51957 841 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 RPS6P62753 249 aaKnown RBP7.55□□□□□ -1.2
CD44-204ENST00000279452 PDE4DQ08499 809 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 ANKRD1Q15327 319 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 ARMCX2Q7L311 632 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 EEPD1Q7L9B9 569 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 CLEC4DQ8WXI8 215 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 GPKOWQ92917 476 aaPredicted RBP eCLIP7.55□□□□□ -1.2
CD44-204ENST00000279452 CUL5Q93034 780 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 C22orf23Q9BZE7 217 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 TM6SF1Q9BZW5 370 aa7.55□□□□□ -1.2
CD44-204ENST00000279452 NCOA5Q9HCD5 579 aaKnown RBP7.55□□□□□ -1.2
CD44-204ENST00000279452 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.55□□□□□ -1.2
CD44-204ENST00000279452 DIS3Q9Y2L1 958 aaKnown RBP7.55□□□□□ -1.2
CD44-204ENST00000279452 CNTNAP5Q8WYK1 1306 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 DNAJC25-GNG10A0A024R161 153 aa7.54□□□□□ -1.2
CD44-204ENST00000279452 SOWAHBA6NEL2 793 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms