RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 GRIN1Q05586 938 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 SF3A3Q12874 501 aaKnown RBP eCLIP17.47■□□□□ 0.391e-6■■■□□ 16.8
CTDSP1-201ENST00000273062 PTPAQ15257 358 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 WASHC4Q2M389 1173 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 TUBB8Q3ZCM7 444 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 FAM153CQ494X1 144 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 FILIP1LQ4L180 1135 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 SLC30A9Q6PML9 568 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 NUP133Q8WUM0 1156 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 CCDC43Q96MW1 224 aaKnown RBP17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 EPAS1Q99814 870 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 EHD2Q9NZN4 543 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 FAM153AQ9UHL3 310 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 GGA2Q9UJY4 613 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 LTBP4Q8N2S1 1624 aa17.47■□□□□ 0.39
CTDSP1-201ENST00000273062 FESP07332 822 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 SUSD4Q5VX71 490 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 TCP11Q8WWU5 503 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 PUS7LQ9H0K6 701 aaKnown RBP17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 CORO1CQ9ULV4 474 aaPredicted RBP17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 DUSP10Q9Y6W6 482 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 PHLPP1O60346 1717 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 RCCD1A6NED2 376 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 RANBP1P43487 201 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 HERVK_113P62684 666 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 POSTNQ15063 836 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 PPP1R7Q15435 360 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 ALS2CLQ60I27 953 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 ZNF34Q8IZ26 560 aa17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 CCDC47Q96A33 483 aaKnown RBP17.46■□□□□ 0.39
CTDSP1-201ENST00000273062 NRAPQ86VF7 1730 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 MYH8P13535 1937 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 DIAPH2O60879 1101 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 NDUFA10O95299 355 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 ECEL1O95672 775 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 HAND2P61296 217 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 CKAP4Q07065 602 aaKnown RBP17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 IFFO1Q0D2I5 559 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 MORC3Q14149 939 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 CCDC122Q5T0U0 273 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 MSL1Q68DK7 614 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 CWF19L1Q69YN2 538 aaKnown RBP17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 CYP26C1Q6V0L0 522 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 SMIM5Q71RC9 77 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 MAEAQ7L5Y9 396 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 BRAPQ7Z569 592 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 VGLL2Q8N8G2 317 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 B4GALNT2Q8NHY0 566 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 HVCN1Q96D96 273 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 DSCC1Q9BVC3 393 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 AGXT2Q9BYV1 514 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 PIDD1Q9HB75 910 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 ANKRD36CQ5JPF3 1778 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 LOC102724428A0A0B4J2F2 783 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 ERICH2A1L162 156 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 GNAT1P11488 350 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 CD44P16070 742 aaKnown RBP17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 SIK1P57059 783 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 SMYD4Q8IYR2 804 aaPredicted RBP17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 AGAP11Q8TF27 550 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 LACRTQ9GZZ8 138 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 JADE2Q9NQC1 790 aa17.45■□□□□ 0.38
CTDSP1-201ENST00000273062 ZSCAN5CA6NGD5 496 aaPredicted RBP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 E7EWF7 191 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 CLTAP09496 248 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 PAPOLAP51003 745 aaKnown RBP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 ITGB3BPQ13352 177 aaPredicted RBP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 CHADLQ6NUI6 762 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 TRIM58Q8NG06 486 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 SEC16BQ96JE7 1060 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 NUP88Q99567 741 aaPredicted RBP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 PAIP2Q9BPZ3 127 aaKnown RBP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 TSGA10Q9BZW7 698 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 CCDC87Q9NVE4 849 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 EPN1Q9Y6I3 576 aaPredicted RBP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 SPATA31A5Q5VU36 1347 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 SPATA31A7Q8IWB4 1347 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 ESYT3A0FGR9 886 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 AHCYL1O43865 530 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 PDE8AO60658 829 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 TMOD1P28289 359 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 EPHB4P54760 987 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 PNMA8AQ86V59 439 aaPredicted RBP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 IQCKQ8N0W5 287 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 MLKLQ8NB16 471 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 RPGRIP1Q96KN7 1286 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 PSMB7Q99436 277 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 PAPOLBQ9NRJ5 636 aaKnown RBP17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 FBXO3Q9UK99 471 aa17.44■□□□□ 0.38
CTDSP1-201ENST00000273062 ERVV-1B6SEH8 477 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 CASP1P29466 404 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 PANK4Q9NVE7 773 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 SLC5A4Q9NY91 659 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 LAMA4Q16363 1823 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 KRT9P35527 623 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 PHKA1P46020 1223 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 CREG2Q8IUH2 290 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 EHBP1Q8NDI1 1231 aa17.43■□□□□ 0.38
CTDSP1-201ENST00000273062 TBC1D5Q92609 795 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms