RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 CCDC114Q96M63 670 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 NOC4LQ9BVI4 516 aaKnown RBP15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP42Q9H9J4 1324 aaKnown RBP15.24■□□□□ 0.03
SIX4-201ENST00000216513 NBPF26B4DH59 902 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L15C9J2P7 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L13C9JLJ4 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L11C9JVI0 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L18D6R9N7 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L22D6RA61 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L17D6RBQ6 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L19D6RCP7 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L20D6RJB6 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 PTH1RQ03431 593 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 USP17L24Q0WX57 530 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 NBPF10Q6P3W6 841 aaKnown RBP15.24■□□□□ 0.03
SIX4-201ENST00000216513 CCDC91Q7Z6B0 441 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 NBPF15Q8N660 670 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 PCDHB13Q9Y5F0 798 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 PCP11498 1178 aaKnown RBP15.24■□□□□ 0.03
SIX4-201ENST00000216513 CETPP11597 493 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 CTR9Q6PD62 1173 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 RASGRP4Q8TDF6 673 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 RNF146Q9NTX7 359 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 FEM1BQ9UK73 627 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 GAS8O95995 478 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 MCAMP43121 646 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 BLZF1Q9H2G9 400 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 PIDD1Q9HB75 910 aa15.24■□□□□ 0.03
SIX4-201ENST00000216513 MROH7-TTC4A0A0A0MT08 1334 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 CCDC85CA6NKD9 419 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 ZMYM4Q5VZL5 1548 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 FAM117BQ6P1L5 589 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 GCNAQ96QF7 691 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 KIF9Q9HAQ2 790 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 ADARB2Q9NS39 739 aaKnown RBP15.23■□□□□ 0.03
SIX4-201ENST00000216513 PSMB7Q99436 277 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 HINFPQ9BQA5 517 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 ZNF70Q9UC06 446 aaPredicted RBP15.23■□□□□ 0.03
SIX4-201ENST00000216513 DIP2AQ14689 1571 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 TYRO3Q06418 890 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 ATXN8OSP0DMR3 200 aa15.23■□□□□ 0.03
SIX4-201ENST00000216513 OATP04181 439 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 TNFAIP3P21580 790 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 RMDN3Q96TC7 470 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 GOLGA6L9A6NEM1 432 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 XPOTO43592 962 aaKnown RBP15.22■□□□□ 0.03
SIX4-201ENST00000216513 PSAPP07602 524 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 CYLC1P35663 651 aaPredicted RBP15.22■□□□□ 0.03
SIX4-201ENST00000216513 HGSO14964 777 aaPredicted RBP15.22■□□□□ 0.03
SIX4-201ENST00000216513 FCGRTP55899 365 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 TTLL4Q14679 1199 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 EPHA10Q5JZY3 1008 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 PPP1R9BQ96SB3 815 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 GBA2Q9HCG7 927 aaPredicted RBP15.22■□□□□ 0.03
SIX4-201ENST00000216513 KCNH3Q9ULD8 1083 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 SYNJ2BP-COX16A0A087WUM0 186 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 SLC44A5Q8NCS7 719 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 DEFB129Q9H1M3 183 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 COX16Q9P0S2 106 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 CNTNAP4Q9C0A0 1308 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 CEP57Q86XR8 500 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 FAM178BQ8IXR5 827 aa15.22■□□□□ 0.03
SIX4-201ENST00000216513 IGKV5-2P06315 115 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 GYS1P13807 737 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 STAT3P40763 770 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 KLHL40Q2TBA0 621 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 POMGNT1Q8WZA1 660 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 USTQ9Y2C2 406 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 C6orf222P0C671 652 aaPredicted RBP15.21■□□□□ 0.03
SIX4-201ENST00000216513 IWS1Q96ST2 819 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 VPS16Q9H269 839 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 ELP1O95163 1332 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 ZMYM1Q5SVZ6 1142 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 NACC1Q96RE7 527 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 LLPHQ9BRT6 129 aaKnown RBP15.21■□□□□ 0.03
SIX4-201ENST00000216513 ODR4Q5SWX8 454 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 EXOC8Q8IYI6 725 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 CCDC127Q96BQ5 260 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 RABGAP1Q9Y3P9 1069 aa15.21■□□□□ 0.03
SIX4-201ENST00000216513 H0YCG3 227 aa15.21■□□□□ 0.02
SIX4-201ENST00000216513 UPP2O95045 317 aa15.21■□□□□ 0.02
SIX4-201ENST00000216513 LIN9Q5TKA1 542 aa15.21■□□□□ 0.02
SIX4-201ENST00000216513 CATSPER4Q7RTX7 472 aa15.21■□□□□ 0.02
SIX4-201ENST00000216513 OR52Z1P0C646 297 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 DCUN1D2Q6PH85 259 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 SYT10Q6XYQ8 523 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 EEF2KMTQ96G04 330 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 CDHR2Q9BYE9 1310 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 PPP2R5AQ15172 486 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 ARHGAP44Q17R89 818 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 CSGALNACT2Q8N6G5 542 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 IFT81Q8WYA0 676 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 HNRNPDLO14979 420 aaKnown RBP15.2■□□□□ 0.02
SIX4-201ENST00000216513 RPS12P25398 132 aaKnown RBP15.2■□□□□ 0.02
SIX4-201ENST00000216513 IRX5P78411 483 aaPredicted RBP15.2■□□□□ 0.02
SIX4-201ENST00000216513 ANKRD13AQ8IZ07 590 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 KIF28PB7ZC32 967 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 ARMCX5Q6P1M9 558 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 TMEM39BQ9GZU3 492 aa15.2■□□□□ 0.02
SIX4-201ENST00000216513 ZMYM6O95789 1325 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms