RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 CDK5RAP3Q96JB5 506 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 IDI2Q9BXS1 227 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 GLT8D2Q9H1C3 349 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 PDCL3Q9H2J4 239 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 TMX1Q9H3N1 280 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 RIC8AQ9NPQ8 531 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 SERPINA10Q9UK55 444 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 SLX4Q8IY92 1834 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 AKR1B15C9JRZ8 316 aaPredicted RBP9.29□□□□□ -0.92
VAMP3-201ENST00000054666 ZBTB5O15062 677 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 CTIFO43310 598 aaKnown RBP9.29□□□□□ -0.92
VAMP3-201ENST00000054666 PPP1R2P41236 205 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 TECP42680 631 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 MRPL12P52815 198 aaKnown RBP9.29□□□□□ -0.92
VAMP3-201ENST00000054666 CERKLQ49MI3 558 aaPredicted RBP9.29□□□□□ -0.92
VAMP3-201ENST00000054666 IGSF22Q8N9C0 903 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 DCAF4Q8WV16 495 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 PLIN2Q99541 437 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 JMJD4Q9H9V9 463 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 EXOC1Q9NV70 894 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 KBTBD4Q9NVX7 518 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 TMEM260Q9NX78 707 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 STK32BQ9NY57 414 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 ADD3Q9UEY8 706 aaKnown RBP9.29□□□□□ -0.92
VAMP3-201ENST00000054666 GDAQ9Y2T3 454 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 ITIH6Q6UXX5 1313 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 SCN9AQ15858 1988 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 N4BP3O15049 544 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 NPM3O75607 178 aaKnown RBP9.29□□□□□ -0.92
VAMP3-201ENST00000054666 RHOBTB3O94955 611 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 SLC1A4P43007 532 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 CACNB3P54284 484 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 GOLGA8FQ08AF8 430 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 GOLGA8DPQ0D2H9 430 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 SYCP1Q15431 976 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 AOC3Q16853 763 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 KMT5BQ4FZB7 885 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 KCTD1Q719H9 257 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 TC2NQ8N9U0 490 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 NAP1L4Q99733 375 aaKnown RBP9.29□□□□□ -0.92
VAMP3-201ENST00000054666 KANSL2Q9H9L4 492 aa9.29□□□□□ -0.92
VAMP3-201ENST00000054666 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.29□□□□□ -0.92
VAMP3-201ENST00000054666 SIPA1L1O43166 1804 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 KCNJ18B7U540 433 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 H7C1D1 291 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 PPIP5K2O43314 1243 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 MARCH6O60337 910 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 GCFC2P16383 781 aaKnown RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 CHRNA5P30532 468 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 CCT6AP40227 531 aaKnown RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TXKP42681 527 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 PRCPP42785 496 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 ADKP55263 362 aaKnown RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 ASIC1P78348 528 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 ICA1Q05084 483 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TRIM14Q14142 442 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 KCNJ12Q14500 433 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 KRT31Q15323 416 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TMEM179Q6ZVK1 233 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 CNGA4Q8IV77 575 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TRIM47Q96LD4 638 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 PANX2Q96RD6 677 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 NAA15Q9BXJ9 866 aaKnown RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 DNAJC18Q9H819 358 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 KCNQ5Q9NR82 932 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TMOD2Q9NZR1 351 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 NYAP2Q9P242 653 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 MAGEC2Q9UBF1 373 aaPredicted RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 STK17AQ9UEE5 414 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 LRWD1Q9UFC0 647 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 LIMA1Q9UHB6 759 aaKnown RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 BICDL2A1A5D9 508 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TEX33O43247 280 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 SLC16A2P36021 539 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 FXR2P51116 673 aaKnown RBP eCLIP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 COPB1P53618 953 aaKnown RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 SLC15A2Q16348 729 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TCP11X2Q5H9J9 407 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 SLFN13Q68D06 897 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TTBK2Q6IQ55 1244 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 SYT10Q6XYQ8 523 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 APTXQ7Z2E3 356 aaKnown RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 CREBRFQ8IUR6 639 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 ADSSL1Q8N142 457 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 NOC3LQ8WTT2 800 aaKnown RBP9.28□□□□□ -0.92
VAMP3-201ENST00000054666 TSC1Q92574 1164 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 FAM198AQ9UFP1 575 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 MAPK8IP1Q9UQF2 711 aa9.28□□□□□ -0.92
VAMP3-201ENST00000054666 PHLPP2Q6ZVD8 1323 aa9.27□□□□□ -0.92
VAMP3-201ENST00000054666 COL2A1P02458 1487 aaPredicted RBP9.27□□□□□ -0.93
VAMP3-201ENST00000054666 ZNF646O15015 1829 aaPredicted RBP9.27□□□□□ -0.93
VAMP3-201ENST00000054666 DDTLA6NHG4 134 aaPredicted RBP9.27□□□□□ -0.93
VAMP3-201ENST00000054666 FAM196BA6NMK8 535 aa9.27□□□□□ -0.93
VAMP3-201ENST00000054666 USP17L10C9JJH3 530 aa9.27□□□□□ -0.93
VAMP3-201ENST00000054666 MFAP3LO75121 409 aa9.27□□□□□ -0.93
VAMP3-201ENST00000054666 TDP2O95551 362 aa9.27□□□□□ -0.93
VAMP3-201ENST00000054666 EEF2P13639 858 aaKnown RBP9.27□□□□□ -0.93
VAMP3-201ENST00000054666 PDE4DQ08499 809 aa9.27□□□□□ -0.93
VAMP3-201ENST00000054666 UBE2SQ16763 222 aa9.27□□□□□ -0.93
VAMP3-201ENST00000054666 KRT79Q5XKE5 535 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms