RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PDE11AQ9HCR9 933 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SUCLA2Q9P2R7 463 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PCSK1NQ9UHG2 260 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 AP1M2Q9Y6Q5 423 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 C2orf81A6NN90 581 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 NUDT19A8MXV4 375 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 RHOBTB3O94955 611 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 C6orf222P0C671 652 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PMS1P54277 932 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 FKBP4Q02790 459 aaKnown RBP eCLIP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 RABL6Q3YEC7 729 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 MINDY4Q4G0A6 757 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ANKRD20A4Q4UJ75 823 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ANKRD20A8PQ5CZ79 823 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 IGSF11Q5DX21 431 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ANKRD20A2Q5SQ80 823 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ANKRD20A1Q5TYW2 823 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ANKRD20A3Q5VUR7 823 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 POMGNT1Q8WZA1 660 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 CFAP36Q96G28 342 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ABCG4Q9H172 646 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 GNAT3A8MTJ3 354 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 CDC45O75419 566 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PECAM1P16284 738 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 KCNJ6P48051 423 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 AMPHP49418 695 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 VAC14Q08AM6 782 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 PCSK7Q16549 785 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 GEN1Q17RS7 908 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 VPS52Q8N1B4 723 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 MIS18AQ9NYP9 233 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 EXOC7Q9UPT5 735 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 MYH15Q9Y2K3 1946 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 MBD4O95243 580 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 POLR2BP30876 1174 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 SULT1E1P49888 294 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 BBS9Q3SYG4 887 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF397Q8NF99 534 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 EIF2AQ9BY44 585 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 MRPL9Q9BYD2 267 aaKnown RBP3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ADNPQ9H2P0 1102 aa3.93□□□□□ -1.78
SCN1A-221ENST00000641996 ATP5BP06576 529 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 HSMCR30P0CW71 290 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 PEX5P50542 639 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 COX10Q12887 443 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC183Q5T5S1 534 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SNRNP48Q6IEG0 339 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 MTMR9Q96QG7 549 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CHST12Q9NRB3 414 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SAP30BPQ9UHR5 308 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TMEM5Q9Y2B1 443 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 FPGT-TNNI3KV9GXZ4 949 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 VSTM5A8MXK1 200 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 PDE5AO76074 875 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 ACAT1P24752 427 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 ANXA13P27216 316 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SEMA3AQ14563 771 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 NCAPG2Q86XI2 1143 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CFAP61Q8NHU2 1237 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 NCLNQ969V3 563 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CABS1Q96KC9 395 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 PPP1R36Q96LQ0 422 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 VPS18Q9P253 973 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 POLEQ07864 2286 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 A0A1W2PRQ8 180 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 BECN2A8MW95 431 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 P4HA1P13674 534 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 PPARDQ03181 441 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 GOLGA8FQ08AF8 430 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 GOLGA8DPQ0D2H9 430 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 NLRP9Q7RTR0 991 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 RIC3Q7Z5B4 369 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TCAIMQ8N3R3 496 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 ACMSDQ8TDX5 336 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 LBHD1Q9BQE6 289 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 THUMPD2Q9BTF0 503 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 APOL6Q9BWW8 343 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 LSM14BQ9BX40 385 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 DCAF16Q9NXF7 216 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 DNAI1Q9UI46 699 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SVILO95425 2214 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 EXTL3O43909 919 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF132P52740 706 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 MTMR3Q13615 1198 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TERF2Q15554 542 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 OASLQ15646 514 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 ARMC6Q6NXE6 501 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 IRGCQ6NXR0 463 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 MFSD6Q6ZSS7 791 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 POTEDQ86YR6 584 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 IFNL1Q8IU54 200 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC83Q8IWF9 413 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 TBATAQ96M53 351 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 RIC8AQ9NPQ8 531 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SENP1Q9P0U3 644 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 SNTNA6NMZ2 147 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 NPPAP01160 153 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 PSMA4P25789 261 aaKnown RBP3.92□□□□□ -1.78
SCN1A-221ENST00000641996 HDAC4P56524 1084 aa3.92□□□□□ -1.78
SCN1A-221ENST00000641996 POMZP3Q6PJE2 187 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms