RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PSMD6Q15008 389 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ESRP1Q6NXG1 681 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ARMCX6Q7L4S7 300 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 PSMA8Q8TAA3 256 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 RBM17Q96I25 401 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CTAGE1Q96RT6 745 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SIN3AQ96ST3 1273 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 TRIM55Q9BYV6 548 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 IFT122Q9HBG6 1241 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 BABAM1Q9NWV8 329 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 PSMD12O00232 456 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 MAP3K13O43283 966 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 RPL13P26373 211 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 EEF1GP26641 437 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 TBX2Q13207 712 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SLC45A4Q5BKX6 768 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF530Q6P9A1 599 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ANKRD2Q9GZV1 360 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ARIH1Q9Y4X5 557 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CDK5RAP2Q96SN8 1893 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 AATKQ6ZMQ8 1374 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SPDYE2BA6NHP3 402 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CAPN9O14815 690 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 KIF1CO43896 1103 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SPDYE6P0CI01 402 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 HSPA1LP34931 641 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CDC42EP1Q00587 391 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 OSBPL9Q96SU4 736 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 IFIH1Q9BYX4 1025 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 KAT14Q9H8E8 782 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 TIPRLO75663 272 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ADAMTS2O95450 1211 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SGO2Q562F6 1265 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ICE2Q659A1 982 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CSGALNACT1Q8TDX6 532 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 TEKT4Q8WW24 435 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 NEUROG2Q9H2A3 272 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 KCNK9Q9NPC2 374 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 USP20Q9Y2K6 914 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 RRP7AQ9Y3A4 280 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 VIRMAQ69YN4 1812 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 HPDP32754 393 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 TRIP4Q15650 581 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 LMBR1Q8WVP7 490 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SPDL1Q96EA4 605 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 AMOTL2Q9Y2J4 779 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 YEATS2Q9ULM3 1422 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC141Q6ZP82 1450 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ZFHX2Q9C0A1 2572 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC194A0A1B0GVG4 234 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ITGAXP20702 1163 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SF3A3Q12874 501 aaKnown RBP eCLIP3.04□□□□□ -1.922e-17■■■■■ 37.8
SCN1A-219ENST00000641575 TBC1D10BQ4KMP7 808 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CC2D1AQ6P1N0 951 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 TREML1Q86YW5 311 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SH3TC2Q8TF17 1288 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 XPO6Q96QU8 1125 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SAP130Q9H0E3 1048 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ARMT1Q9H993 441 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 IQSEC3Q9UPP2 1182 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SDHBP21912 280 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SESN3P58005 492 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ST8SIA6P61647 398 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 BFSP1Q12934 665 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 UVSSAQ2YD98 709 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 AACSQ86V21 672 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 METTL23Q86XA0 190 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SRRM1Q8IYB3 904 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 HIPK4Q8NE63 616 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 MRPS27Q92552 414 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CNPY2Q9Y2B0 182 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CYP46A1Q9Y6A2 500 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 FAM83GA6ND36 823 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 LMNAP02545 664 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 FAM47CQ5HY64 1035 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 WDR44Q5JSH3 913 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC102BQ68D86 513 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 FSIP1Q8NA03 581 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 TSGA10Q9BZW7 698 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 FBXO2Q9UK22 296 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 PAIP2BQ9ULR5 123 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 E7EVH7 732 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 H0YCG3 227 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 NDUFAB1O14561 156 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF213O14771 459 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CAND2O75155 1236 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 PARNO95453 639 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF24P17028 368 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 CLCN1P35523 988 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ARHGDIAP52565 204 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 PDX1P52945 283 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 PPFIA1Q13136 1202 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 IQCB1Q15051 598 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 BRINP3Q76B58 766 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 EIF3CQ99613 913 aaKnown RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 SAE1Q9UBE0 346 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-219ENST00000641575 WWC3Q9ULE0 1092 aa3.04□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF711Q9Y462 761 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms