RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CFAP73A6NFT4 308 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 E2F6O75461 281 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 HSPA2P54652 639 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 DEUP1Q05D60 604 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 ODF2Q5BJF6 829 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 C1orf141Q5JVX7 400 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 MEX3CQ5U5Q3 659 aaKnown RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 NAA16Q6N069 864 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 MAATS1Q7Z4T9 603 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 KCNG4Q8TDN1 519 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 AGAP11Q8TF27 550 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 CNKSR1Q969H4 720 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 OPTNQ96CV9 577 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 MMS19Q96T76 1030 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 GALNT8Q9NY28 637 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 SLC5A4Q9NY91 659 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 ANKRD36CQ5JPF3 1778 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 RFX7Q2KHR2 1363 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 IGKV5-2P06315 115 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 GHRP10912 638 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 VAV2P52735 878 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ZC3H6P61129 1189 aaKnown RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 MYBPC3Q14896 1274 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 SEPT2Q15019 361 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC80Q76M96 950 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 RASGRP2Q7LDG7 609 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 LCA5Q86VQ0 697 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 DZIP3Q86Y13 1208 aaKnown RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ATL2Q8NHH9 583 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 NAF1Q96HR8 494 aaKnown RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 SEC16BQ96JE7 1060 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 HINFPQ9BQA5 517 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 VCX3BQ9H321 246 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 SLC52A2Q9HAB3 445 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 VCX3AQ9NNX9 186 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 PAIP2BQ9ULR5 123 aaKnown RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 KCPQ6ZWJ8 1503 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 A0A0D9SFI3 127 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 SURF6O75683 361 aaKnown RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 NPTXRO95502 500 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 LACTBP83111 547 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 TEFQ10587 303 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 LACTB2Q53H82 288 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 PPP4R3AQ6IN85 833 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 CEP128Q6ZU80 1094 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 CNGA4Q8IV77 575 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 AENQ8WTP8 325 aaKnown RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 EAF2Q96CJ1 260 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 FAM227BQ96M60 508 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 MOV10L1Q9BXT6 1211 aaKnown RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 TSPYL2Q9H2G4 693 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ANKIB1Q9P2G1 1089 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 HDAC6Q9UBN7 1215 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 DBF4Q9UBU7 674 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 SALL1Q9NSC2 1324 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ENC1O14682 589 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 SLC27A2O14975 620 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 UPP2O95045 317 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ALDH1B1P30837 517 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ATP11AP98196 1134 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 CUL4BQ13620 913 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ANKRD20A2Q5SQ80 823 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ANKRD20A1Q5TYW2 823 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ANKRD20A3Q5VUR7 823 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 SYNE3Q6ZMZ3 975 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 UBE3BQ7Z3V4 1068 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 TMTC1Q8IUR5 882 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 WHAMMQ8TF30 809 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 RRP36Q96EU6 259 aaKnown RBP7.57□□□□□ -1.2
SCN1A-213ENST00000636759 SUCLG2Q96I99 432 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 FGD4Q96M96 766 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 ZWILCHQ9H900 591 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 WDR35Q9P2L0 1181 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 DACH1Q9UI36 760 aa7.57□□□□□ -1.2
SCN1A-213ENST00000636759 HMGB1P1B2RPK0 211 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 PDLIM1O00151 329 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ABLIM1O14639 778 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ALDH1L1O75891 902 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 KRT14P02533 472 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 VIMP08670 466 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ATP2A2P16615 1042 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 RPS6KB1P23443 525 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 CASP7P55210 303 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 GLE1Q53GS7 698 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 SEPT14Q6ZU15 432 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ZNF589Q86UQ0 364 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 NUTM2AQ8IVF1 878 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 AIDAQ96BJ3 306 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 RMDN2Q96LZ7 410 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 ANKRD27Q96NW4 1050 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 SUN2Q9UH99 717 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 NFE2L3Q9Y4A8 694 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 PALLDQ8WX93 1383 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 BCORQ6W2J9 1755 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 LRP6O75581 1613 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 A0A0U1RQJ8 604 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 FLOT1O75955 427 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 GLRX3O76003 335 aaKnown RBP7.56□□□□□ -1.2
SCN1A-213ENST00000636759 SYKP43405 635 aa7.56□□□□□ -1.2
SCN1A-213ENST00000636759 AMPD2Q01433 879 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms