RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ATP2C1P98194 919 aaPredicted RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 CEBPZQ03701 1054 aaKnown RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 AP3B2Q13367 1082 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 NONOQ15233 471 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLN3-248ENST00000636355 SHROOM1Q2M3G4 852 aaPredicted RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 AXDND1Q5T1B0 1012 aaPredicted RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 KCTD1Q719H9 257 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 MIGA2Q7L4E1 593 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 SULF1Q8IWU6 871 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 DCPSQ96C86 337 aaKnown RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 C12orf42Q96LP6 360 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 TIGD1Q96MW7 591 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 FEZ1Q99689 392 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 PYM1Q9BRP8 204 aaKnown RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 AMNQ9BXJ7 453 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 UBA5Q9GZZ9 404 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 DACT1Q9NYF0 836 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 SRPRBQ9Y5M8 271 aaKnown RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 ASTN2O75129 1339 aaPredicted RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 SMCO2A6NFE2 343 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 GLTPD2A6NH11 291 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 CAVIN2O95810 425 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 SLURP2P0DP57 97 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 GCFC2P16383 781 aaKnown RBP12.07□□□□□ -0.48
CLN3-248ENST00000636355 LIG1P18858 919 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 PRPHP41219 470 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 MRPL12P52815 198 aaKnown RBP12.07□□□□□ -0.48
CLN3-248ENST00000636355 HIRAP54198 1017 aaPredicted RBP12.07□□□□□ -0.48
CLN3-248ENST00000636355 MAP3K11Q16584 847 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 QRICH1Q2TAL8 776 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 NBPF12Q5TAG4 269 aaPredicted RBP12.07□□□□□ -0.48
CLN3-248ENST00000636355 RESP18Q5W5W9 173 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 PIK3AP1Q6ZUJ8 805 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 CCAR1Q8IX12 1150 aaKnown RBP12.07□□□□□ -0.48
CLN3-248ENST00000636355 ELOA2Q8IYF1 753 aaPredicted RBP12.07□□□□□ -0.48
CLN3-248ENST00000636355 FSIP1Q8NA03 581 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 ENGASEQ8NFI3 743 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 MAF1Q9H063 256 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 PICK1Q9NRD5 415 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 FBXO2Q9UK22 296 aaPredicted RBP12.07□□□□□ -0.48
CLN3-248ENST00000636355 PCDHA6Q9UN73 950 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 PCDHA8Q9Y5H6 950 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 RLFQ13129 1914 aa12.07□□□□□ -0.48
CLN3-248ENST00000636355 USP17L10C9JJH3 530 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 TMEM232C9JQI7 657 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 NF2P35240 595 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 ECE1P42892 770 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 CLK2P49760 499 aaKnown RBP12.06□□□□□ -0.48
CLN3-248ENST00000636355 MRE11P49959 708 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 IKQ13123 557 aaPredicted RBP12.06□□□□□ -0.48
CLN3-248ENST00000636355 TTBK2Q6IQ55 1244 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 NEK8Q86SG6 692 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 PNMA8AQ86V59 439 aaPredicted RBP12.06□□□□□ -0.48
CLN3-248ENST00000636355 FBXO11Q86XK2 927 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 FMR1NBQ8N0W7 255 aaPredicted RBP12.06□□□□□ -0.48
CLN3-248ENST00000636355 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.06□□□□□ -0.48
CLN3-248ENST00000636355 ACER1Q8TDN7 264 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 PIBF1Q8WXW3 757 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 KLRG1Q96E93 195 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 CCDC34Q96HJ3 373 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 WRNIP1Q96S55 665 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 TNMDQ9H2S6 317 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 RANBP17Q9H2T7 1088 aaKnown RBP12.06□□□□□ -0.48
CLN3-248ENST00000636355 CPVLQ9H3G5 476 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 GPBP1L1Q9HC44 474 aaPredicted RBP12.06□□□□□ -0.48
CLN3-248ENST00000636355 HPSEQ9Y251 543 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 PCDHB6Q9Y5E3 794 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 MYPNQ86TC9 1320 aa12.06□□□□□ -0.48
CLN3-248ENST00000636355 SYCE3A1L190 88 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 UNCXA6NJT0 531 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 C19orf81C9J6K1 198 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 PIK3CDO00329 1044 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 PPP1R11O60927 126 aaPredicted RBP12.05□□□□□ -0.48
CLN3-248ENST00000636355 NR1I2O75469 434 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 FOSP01100 380 aaPredicted RBP12.05□□□□□ -0.48
CLN3-248ENST00000636355 VEGFAP15692 232 aaPredicted RBP12.05□□□□□ -0.48
CLN3-248ENST00000636355 EPHX2P34913 555 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 SNW1Q13573 536 aaKnown RBP12.05□□□□□ -0.48
CLN3-248ENST00000636355 FAM83BQ5T0W9 1011 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 MOXD1Q6UVY6 613 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 SAMD3Q8N6K7 520 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 ZNF280CQ8ND82 737 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 RBM46Q8TBY0 533 aaKnown RBP12.05□□□□□ -0.48
CLN3-248ENST00000636355 GOLPH3LQ9H4A5 285 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 FAM13BQ9NYF5 915 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 USP25Q9UHP3 1055 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 PRR12Q9ULL5 1215 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 PCDHA1Q9Y5I3 950 aa12.05□□□□□ -0.48
CLN3-248ENST00000636355 FAM205CA6NFA0 338 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 RAD21O60216 631 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 PPP1R12BO60237 982 aaPredicted RBP12.04□□□□□ -0.48
CLN3-248ENST00000636355 CCDC192P0DO97 292 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 PFKFB1P16118 471 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 PTPRAP18433 802 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 SLC16A2P36021 539 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 LONP1P36776 959 aaKnown RBP12.04□□□□□ -0.48
CLN3-248ENST00000636355 BACE1P56817 501 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 EARS2Q5JPH6 523 aaKnown RBP12.04□□□□□ -0.48
CLN3-248ENST00000636355 AK8Q96MA6 479 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 TSPY26PQ9H489 355 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms