RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RANBP17Q9H2T7 1088 aaKnown RBP22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 RAVER2Q9HCJ3 691 aaKnown RBP22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 PNMA2Q9UL42 364 aa22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 ZNF214Q9UL59 606 aaPredicted RBP22.22■■□□□ 1.15
SQSTM1-216ENST00000626660 TNPO2O14787 897 aaKnown RBP22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 GNRH1P01148 92 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 SLC4A3P48751 1232 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 METAP2P50579 478 aaKnown RBP eCLIP22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 SNAP25P60880 206 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 PPP2R5BQ15173 497 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 RABEP1Q15276 862 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 SNRNP48Q6IEG0 339 aaKnown RBP22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 COA7Q96BR5 231 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 ARHGAP39Q9C0H5 1083 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 PORCNQ9H237 461 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 EFCC1Q9HA90 598 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 VAT1LQ9HCJ6 419 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 DOCK3Q8IZD9 2030 aa22.21■■□□□ 1.15
SQSTM1-216ENST00000626660 ZSWIM8A7E2V4 1837 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 CCDC196A0A1B0GTZ2 297 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 HOXD10P28358 340 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 RGS19P49795 217 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 EVCP57679 992 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 NCAPG2Q86XI2 1143 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 TRIM47Q96LD4 638 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 MCOLN1Q9GZU1 580 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 MROH8Q9H579 483 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 JMJD4Q9H9V9 463 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 IVNS1ABPQ9Y6Y0 642 aa22.2■■□□□ 1.14
SQSTM1-216ENST00000626660 ICAM1P05362 532 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 ERCC3P19447 782 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 SMARCA1P28370 1054 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 AK2P54819 239 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 CDC37Q16543 378 aaPredicted RBP22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 PLEKHH3Q7Z736 793 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 ZNF274Q96GC6 653 aaPredicted RBP22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 KIF2CQ99661 725 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 SPZ1Q9BXG8 430 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 CCPG1Q9ULG6 757 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 TRIM17Q9Y577 477 aa22.19■■□□□ 1.14
SQSTM1-216ENST00000626660 PDIA3P30101 505 aaKnown RBP22.18■■□□□ 1.14
SQSTM1-216ENST00000626660 TKFCQ3LXA3 575 aa22.18■■□□□ 1.14
SQSTM1-216ENST00000626660 TMTC3Q6ZXV5 915 aa22.18■■□□□ 1.14
SQSTM1-216ENST00000626660 GPR142Q7Z601 462 aa22.18■■□□□ 1.14
SQSTM1-216ENST00000626660 CTU1Q7Z7A3 348 aaKnown RBP22.18■■□□□ 1.14
SQSTM1-216ENST00000626660 IL27Q8NEV9 243 aa22.18■■□□□ 1.14
SQSTM1-216ENST00000626660 AGBL1Q96MI9 1066 aa22.18■■□□□ 1.14
SQSTM1-216ENST00000626660 RIOX1Q9H6W3 641 aa22.18■■□□□ 1.14
SQSTM1-216ENST00000626660 NID2Q14112 1375 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 ZNF536O15090 1300 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 PLEKHA8P1O95397 391 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 CTGFP29279 349 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 OTOP1Q7RTM1 612 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 HOMER1Q86YM7 354 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 RRP36Q96EU6 259 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 LARP6Q9BRS8 491 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 FBXO40Q9UH90 709 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 HPS5Q9UPZ3 1129 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 PLXNB2O15031 1838 aa22.17■■□□□ 1.14
SQSTM1-216ENST00000626660 ZBTB5O15062 677 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 ALAS1P13196 640 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 PRMT2P55345 433 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 TRAF1Q13077 416 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 QRICH1Q2TAL8 776 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 NOL8Q76FK4 1167 aaKnown RBP22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 NBPF11Q86T75 865 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 FBXO11Q86XK2 927 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 SRBD1Q8N5C6 995 aaKnown RBP22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 CHST13Q8NET6 341 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 HOMER2Q9NSB8 354 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 SEC63Q9UGP8 760 aaKnown RBP22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 SRRDQ9UH36 339 aa22.16■■□□□ 1.14
SQSTM1-216ENST00000626660 SMCHD1A6NHR9 2005 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 CYTH3O43739 400 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 STRNO43815 780 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 ST18O60284 1047 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 FCER1AP12319 257 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 CCDC82Q8N4S0 544 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 MTMR8Q96EF0 704 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 PIGSQ96S52 555 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 RNF146Q9NTX7 359 aa22.15■■□□□ 1.14
SQSTM1-216ENST00000626660 PNMA6FA0A0J9YX94 578 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 SLC15A5A6NIM6 579 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 PTPREP23469 700 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 CDC27P30260 824 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 CCT2P78371 535 aaKnown RBP22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 CAP1Q01518 475 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 STK3Q13188 491 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 KCTD2Q14681 263 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 SLC35G1Q2M3R5 365 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 CPLX2Q6PUV4 134 aaKnown RBP22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 CMTR1Q8N1G2 835 aaKnown RBP22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 SOCS4Q8WXH5 440 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 PIBF1Q8WXW3 757 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 TRERF1Q96PN7 1200 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 NUDT12Q9BQG2 462 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 AMNQ9BXJ7 453 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 SLKQ9H2G2 1235 aaPredicted RBP22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 ACAD9Q9H845 621 aa22.14■■□□□ 1.13
SQSTM1-216ENST00000626660 TPCN1Q9ULQ1 816 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms