RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 PCP11498 1178 aaKnown RBP21.93■■□□□ 1.1
PDLIM3-212ENST00000620787 GGCXP38435 758 aa21.93■■□□□ 1.1
PDLIM3-212ENST00000620787 IGHMBP2P38935 993 aaKnown RBP21.93■■□□□ 1.1
PDLIM3-212ENST00000620787 DNM2P50570 870 aa21.93■■□□□ 1.1
PDLIM3-212ENST00000620787 EVA1CP58658 441 aa21.93■■□□□ 1.1
PDLIM3-212ENST00000620787 GDAP1L1Q96MZ0 367 aa21.93■■□□□ 1.1
PDLIM3-212ENST00000620787 PURBQ96QR8 312 aaKnown RBP21.93■■□□□ 1.1
PDLIM3-212ENST00000620787 ZNF804BA4D1E1 1349 aa21.93■■□□□ 1.1
PDLIM3-212ENST00000620787 ANO9A1A5B4 782 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 B4DLN1 442 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 AGPSO00116 658 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 ZNF185O15231 689 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 NMT2O60551 498 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 CYLC1P35663 651 aaPredicted RBP21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 TTI2Q6NXR4 508 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 CTR9Q6PD62 1173 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 CCNI2Q6ZMN8 369 aaPredicted RBP21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 TRIM47Q96LD4 638 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 SELENOOQ9BVL4 669 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 FAM205AQ6ZU69 1335 aa21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 NHEJ1Q9H9Q4 299 aaPredicted RBP21.92■■□□□ 1.1
PDLIM3-212ENST00000620787 XIRP1Q702N8 1843 aaKnown RBP21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 EVX2Q03828 476 aa21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 CCDC152Q4G0S7 254 aa21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 MAGEC2Q9UBF1 373 aaPredicted RBP21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 SHOX2O60902 331 aaPredicted RBP21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 RHOBTB3O94955 611 aa21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 CAGE1Q8TC20 777 aa21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 DUSP9Q99956 384 aaKnown RBP21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 EXOC1Q9NV70 894 aa21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 DUSP10Q9Y6W6 482 aa21.91■■□□□ 1.1
PDLIM3-212ENST00000620787 PP2D1A8MPX8 630 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 PSMA7O14818 248 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 KLK7P49862 253 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 SCN7AQ01118 1682 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 PACS2Q86VP3 889 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 CCDC170Q8IYT3 715 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 GIMAP8Q8ND71 665 aaPredicted RBP21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 SMARCC1Q92922 1105 aaPredicted RBP21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 TUBGCP2Q9BSJ2 902 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 CRACR2AQ9BSW2 395 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 C2orf54Q08AI8 447 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 BLIDQ8IZY5 108 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 ZNF384Q8TF68 577 aa21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 NOC3LQ8WTT2 800 aaKnown RBP21.9■■□□□ 1.1
PDLIM3-212ENST00000620787 ANKRD65E5RJM6 399 aa21.89■■□□□ 1.1
PDLIM3-212ENST00000620787 IDEP14735 1019 aa21.89■■□□□ 1.1
PDLIM3-212ENST00000620787 GYG1P46976 350 aa21.89■■□□□ 1.1
PDLIM3-212ENST00000620787 EIF5P55010 431 aaKnown RBP21.89■■□□□ 1.1
PDLIM3-212ENST00000620787 ZBED6P86452 979 aa21.89■■□□□ 1.1
PDLIM3-212ENST00000620787 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.89■■□□□ 1.1
PDLIM3-212ENST00000620787 AENQ8WTP8 325 aaKnown RBP21.89■■□□□ 1.1
PDLIM3-212ENST00000620787 NUP58Q9BVL2 599 aa21.89■■□□□ 1.1
PDLIM3-212ENST00000620787 USP17L12C9JPN9 530 aa21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 USP17L21D6R901 530 aa21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 ORC4O43929 436 aa21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 TRIM21P19474 475 aaKnown RBP21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 CALML3P27482 149 aa21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 TTC31Q49AM3 519 aaPredicted RBP21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 RETREG2Q8NC44 543 aa21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 KBTBD4Q9NVX7 518 aa21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 ZNHIT6Q9NWK9 470 aaKnown RBP21.89■■□□□ 1.09
PDLIM3-212ENST00000620787 FAM47AQ5JRC9 791 aa21.88■■□□□ 1.09
PDLIM3-212ENST00000620787 LRRC15Q8TF66 581 aa21.88■■□□□ 1.09
PDLIM3-212ENST00000620787 MYL1P05976 194 aa21.88■■□□□ 1.09
PDLIM3-212ENST00000620787 CYP27A1Q02318 531 aa21.88■■□□□ 1.09
PDLIM3-212ENST00000620787 RASGRP4Q8TDF6 673 aa21.88■■□□□ 1.09
PDLIM3-212ENST00000620787 KIAA1551Q9HCM1 1747 aa21.88■■□□□ 1.09
PDLIM3-212ENST00000620787 MACROD2A1Z1Q3 448 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 IPO7O95373 1038 aaKnown RBP21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 VAV2P52735 878 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 TBC1D8BQ0IIM8 1120 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 DTHD1Q6ZMT9 781 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 CSGALNACT2Q8N6G5 542 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 FAM76AQ8TAV0 307 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 PPM1EQ8WY54 764 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 DHTKD1Q96HY7 919 aaPredicted RBP21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 TMEM60Q9H2L4 133 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 JADE2Q9NQC1 790 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 FAM184BQ9ULE4 1060 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 MYH10P35580 1976 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 ZNF263O14978 683 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 CDK17Q00537 523 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 SEMA3FQ13275 785 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 DNAJC21Q5F1R6 531 aaKnown RBP21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 IQCEQ6IPM2 695 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 FNBP4Q8N3X1 1017 aaPredicted RBP21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 MMGT1Q8N4V1 131 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 SECISBP2LQ93073 1101 aaKnown RBP21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 PCDHA4Q9UN74 947 aa21.87■■□□□ 1.09
PDLIM3-212ENST00000620787 GOLGA6BA6NDN3 693 aa21.86■■□□□ 1.09
PDLIM3-212ENST00000620787 WTIPA6NIX2 430 aaPredicted RBP21.86■■□□□ 1.09
PDLIM3-212ENST00000620787 M0R2N6 131 aa21.86■■□□□ 1.09
PDLIM3-212ENST00000620787 CREG2Q8IUH2 290 aa21.86■■□□□ 1.09
PDLIM3-212ENST00000620787 RASSF8Q8NHQ8 419 aa21.86■■□□□ 1.09
PDLIM3-212ENST00000620787 GPKOWQ92917 476 aaPredicted RBP eCLIP21.86■■□□□ 1.09
PDLIM3-212ENST00000620787 PLIN2Q99541 437 aa21.86■■□□□ 1.09
PDLIM3-212ENST00000620787 CCSER1Q9C0I3 900 aa21.86■■□□□ 1.09
PDLIM3-212ENST00000620787 KAT14Q9H8E8 782 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms