RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 KRBA2Q6ZNG9 492 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 FMR1NBQ8N0W7 255 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-213ENST00000620219 CPLX3Q8WVH0 158 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 PHF20Q9BVI0 1012 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 MAGEC2Q9UBF1 373 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-213ENST00000620219 NF2P35240 595 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 STAT2P52630 851 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 FILIP1LQ4L180 1135 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 SHC4Q6S5L8 630 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 NLGN2Q8NFZ4 835 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 BARHL2Q9NY43 387 aa17.77■□□□□ 0.44
CPSF1-213ENST00000620219 PNMA6FA0A0J9YX94 578 aa17.77■□□□□ 0.43
CPSF1-213ENST00000620219 DDX39AO00148 427 aaKnown RBP17.77■□□□□ 0.43
CPSF1-213ENST00000620219 COBLO75128 1261 aa17.77■□□□□ 0.43
CPSF1-213ENST00000620219 NDUFB10O96000 172 aa17.77■□□□□ 0.43
CPSF1-213ENST00000620219 GRM1Q13255 1194 aa17.77■□□□□ 0.43
CPSF1-213ENST00000620219 PKN1Q16512 942 aa17.77■□□□□ 0.43
CPSF1-213ENST00000620219 QRICH1Q2TAL8 776 aa17.77■□□□□ 0.43
CPSF1-213ENST00000620219 FZD1Q9UP38 647 aa17.77■□□□□ 0.43
CPSF1-213ENST00000620219 ZKSCAN5Q9Y2L8 839 aa17.77■□□□□ 0.43
CPSF1-213ENST00000620219 HDLBPQ00341 1268 aaKnown RBP17.76■□□□□ 0.43
CPSF1-213ENST00000620219 ZNF543Q08ER8 600 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 SYDE2Q5VT97 1194 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 ANGEL2Q5VTE6 544 aaKnown RBP17.76■□□□□ 0.43
CPSF1-213ENST00000620219 TMC6Q7Z403 805 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 ACER1Q8TDN7 264 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 FAM151AQ8WW52 585 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 WRNIP1Q96S55 665 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 ENTPD3O75355 529 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 DCAF15Q66K64 600 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 SNX29Q8TEQ0 813 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 DCAF8L1A6NGE4 600 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 ASNSP08243 561 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 DCPSQ96C86 337 aaKnown RBP17.76■□□□□ 0.43
CPSF1-213ENST00000620219 NRBP1Q9UHY1 535 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 NHSQ6T4R5 1651 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 MYH2Q9UKX2 1941 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 SNW1Q13573 536 aaKnown RBP17.76■□□□□ 0.43
CPSF1-213ENST00000620219 EARS2Q5JPH6 523 aaKnown RBP17.76■□□□□ 0.43
CPSF1-213ENST00000620219 DYMQ7RTS9 669 aa17.76■□□□□ 0.43
CPSF1-213ENST00000620219 MYCLP12524 364 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-213ENST00000620219 SPP2Q13103 211 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 CABP7Q86V35 215 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 EEF2KMTQ96G04 330 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 WNT10BO00744 389 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 IGSF3O75054 1194 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 OR52Z1P0C646 297 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 TAL1P17542 331 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-213ENST00000620219 TSR1Q2NL82 804 aaKnown RBP17.75■□□□□ 0.43
CPSF1-213ENST00000620219 PP2D1A8MPX8 630 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 ZBTB5O15062 677 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 NCAPH2Q6IBW4 605 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 ZNF526Q8TF50 670 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-213ENST00000620219 IFNKQ9P0W0 207 aa17.75■□□□□ 0.43
CPSF1-213ENST00000620219 PSMD1Q99460 953 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 EXOC1Q9NV70 894 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 SRPRBQ9Y5M8 271 aaKnown RBP17.74■□□□□ 0.43
CPSF1-213ENST00000620219 PTPREP23469 700 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 CCT6AP40227 531 aaKnown RBP17.74■□□□□ 0.43
CPSF1-213ENST00000620219 DEFB129Q9H1M3 183 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 EHMT1Q9H9B1 1298 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 TMOD4Q9NZQ9 345 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 HERC5Q9UII4 1024 aaKnown RBP17.74■□□□□ 0.43
CPSF1-213ENST00000620219 ERCC3P19447 782 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 SMYD4Q8IYR2 804 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-213ENST00000620219 AGBL3Q8NEM8 1001 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 CCPG1Q9ULG6 757 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 CAVIN2O95810 425 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 UBASH3AP57075 661 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 AMPD3Q01432 767 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 GALNT17Q6IS24 598 aa17.74■□□□□ 0.43
CPSF1-213ENST00000620219 DDX25Q9UHL0 483 aaKnown RBP17.74■□□□□ 0.43
CPSF1-213ENST00000620219 PALM3A6NDB9 673 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-213ENST00000620219 CYTH3O43739 400 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 TOB1P50616 345 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-213ENST00000620219 LRMPQ12912 555 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 FHDC1Q9C0D6 1143 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-213ENST00000620219 GGA3Q9NZ52 723 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 HACL1Q9UJ83 578 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 MYH13Q9UKX3 1938 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 TRAF1Q13077 416 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 AXDND1Q5T1B0 1012 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-213ENST00000620219 ZHX2Q9Y6X8 837 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 THSD7AQ9UPZ6 1657 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 CHMP4BP1P59074 171 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 SPZ1Q9BXG8 430 aa17.73■□□□□ 0.43
CPSF1-213ENST00000620219 CDAN1Q8IWY9 1227 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 TRIM47Q96LD4 638 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 TRMT1Q9NXH9 659 aaKnown RBP17.72■□□□□ 0.43
CPSF1-213ENST00000620219 PCDHA12Q9UN75 941 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 MYH7P12883 1935 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 CLCN1P35523 988 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 NLRP12P59046 1061 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 JMJD4Q9H9V9 463 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 PCDHA6Q9UN73 950 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 PCDHA8Q9Y5H6 950 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 CICQ96RK0 1608 aaPredicted RBP17.72■□□□□ 0.43
CPSF1-213ENST00000620219 PYM1Q9BRP8 204 aaKnown RBP17.72■□□□□ 0.43
CPSF1-213ENST00000620219 FBXO28Q9NVF7 368 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 CSADQ9Y600 493 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms