RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 FERMT2Q96AC1 680 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 PDLIM7Q9NR12 457 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.09□□□□□ -0.15
UPF3B-204ENST00000619445 ZHX1Q9UKY1 873 aaPredicted RBP14.09□□□□□ -0.15
UPF3B-204ENST00000619445 STXBP5LQ9Y2K9 1186 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 CUL9Q8IWT3 2517 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 ELP1O95163 1332 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 MCM3APO60318 1980 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 A0A1W2PQ45 241 aaPredicted RBP14.09□□□□□ -0.15
UPF3B-204ENST00000619445 A0A1W2PQY0 241 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 DCDC2CA8MYV0 355 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 POTEB2H3BUK9 544 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 RANBP6O60518 1105 aaKnown RBP14.09□□□□□ -0.15
UPF3B-204ENST00000619445 SNAI1O95863 264 aaPredicted RBP14.09□□□□□ -0.15
UPF3B-204ENST00000619445 CLTBP09497 229 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 FGRP09769 529 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 TAL1P17542 331 aaPredicted RBP14.09□□□□□ -0.15
UPF3B-204ENST00000619445 ACLYP53396 1101 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 TLE2Q04725 743 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 ANKRD33Q7Z3H0 272 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 DCAF4Q8WV16 495 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 GLT1D1Q96MS3 346 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 CRBNQ96SW2 442 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 RWDD1Q9H446 243 aaPredicted RBP14.09□□□□□ -0.15
UPF3B-204ENST00000619445 STARD7Q9NQZ5 370 aa14.09□□□□□ -0.15
UPF3B-204ENST00000619445 SYNRGQ9UMZ2 1314 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 LOC102724159A0A0B4J2E5 919 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 KIAA0355O15063 1070 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 MCCP23508 829 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 NOVP48745 357 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 PWP2Q15269 919 aaKnown RBP14.08□□□□□ -0.16
UPF3B-204ENST00000619445 ARMCX2Q7L311 632 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 SLC17A8Q8NDX2 589 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 KLHDC9Q8NEP7 349 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 SEZ6LQ9BYH1 1024 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 RNF146Q9NTX7 359 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 MTMR10Q9NXD2 777 aa14.08□□□□□ -0.16
UPF3B-204ENST00000619445 TOP1P11387 765 aaKnown RBP14.07□□□□□ -0.16
UPF3B-204ENST00000619445 RAG1P15918 1043 aa14.07□□□□□ -0.16
UPF3B-204ENST00000619445 CTDSPL2Q05D32 466 aa14.07□□□□□ -0.16
UPF3B-204ENST00000619445 CCDC174Q6PII3 467 aa14.07□□□□□ -0.16
UPF3B-204ENST00000619445 FAM133AQ8N9E0 248 aa14.07□□□□□ -0.16
UPF3B-204ENST00000619445 BADQ92934 168 aa14.07□□□□□ -0.16
UPF3B-204ENST00000619445 TRERF1Q96PN7 1200 aa14.07□□□□□ -0.16
UPF3B-204ENST00000619445 UPF3AQ9H1J1 476 aaKnown RBP14.07□□□□□ -0.16
UPF3B-204ENST00000619445 RNF41Q9H4P4 317 aaPredicted RBP14.07□□□□□ -0.16
UPF3B-204ENST00000619445 HOMER2Q9NSB8 354 aa14.07□□□□□ -0.16
UPF3B-204ENST00000619445 TCP11L1Q9NUJ3 509 aa14.07□□□□□ -0.16
UPF3B-204ENST00000619445 FOXP2O15409 715 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 PQBP1O60828 265 aaKnown RBP14.06□□□□□ -0.16
UPF3B-204ENST00000619445 FGAP02671 866 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 C6orf222P0C671 652 aaPredicted RBP14.06□□□□□ -0.16
UPF3B-204ENST00000619445 GJA9P57773 515 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 NKX3-2P78367 333 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 KCNA10Q16322 511 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 CCDC144BQ3MJ40 725 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 CCDC129Q6ZRS4 1044 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 CCDC144CPQ8IYA2 1237 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 TTC14Q96N46 770 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 A1CFQ9NQ94 594 aaKnown RBP14.06□□□□□ -0.16
UPF3B-204ENST00000619445 IL17RBQ9NRM6 502 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 TOMM22Q9NS69 142 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 TMEM39AQ9NV64 488 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 PRR12Q9ULL5 1215 aa14.06□□□□□ -0.16
UPF3B-204ENST00000619445 TRIM43BA6NCK2 446 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 TRIM6-TRIM34B2RNG4 842 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 HIP1O00291 1037 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 CABYRO75952 493 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 ICAM1P05362 532 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 HSPD1P10809 573 aaKnown RBP14.05□□□□□ -0.16
UPF3B-204ENST00000619445 ALAS1P13196 640 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 SMAD3P84022 425 aaKnown RBP14.05□□□□□ -0.16
UPF3B-204ENST00000619445 CCDC96Q2M329 555 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 CCDC178Q5BJE1 867 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 GNASQ5JWF2 1037 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 ZNF697Q5TEC3 545 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 CCSAPQ6IQ19 270 aaPredicted RBP14.05□□□□□ -0.16
UPF3B-204ENST00000619445 BTNL9Q6UXG8 535 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 KCTD1Q719H9 257 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 SMC5Q8IY18 1101 aa14.05□□□□□ -0.16
UPF3B-204ENST00000619445 TRIM43Q96BQ3 446 aaPredicted RBP14.05□□□□□ -0.16
UPF3B-204ENST00000619445 MPHOSPH6Q99547 160 aaKnown RBP14.05□□□□□ -0.16
UPF3B-204ENST00000619445 ADD3Q9UEY8 706 aaKnown RBP14.05□□□□□ -0.16
UPF3B-204ENST00000619445 ZNF536O15090 1300 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 CCDC171Q6TFL3 1326 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 TMEM265A0A087WTH1 108 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 A0A0U1RQG5 324 aaPredicted RBP14.04□□□□□ -0.16
UPF3B-204ENST00000619445 TLR3O15455 904 aaKnown RBP14.04□□□□□ -0.16
UPF3B-204ENST00000619445 ZEB2O60315 1214 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 TNFAIP2Q03169 654 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 FPGSQ05932 587 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 SHHQ15465 462 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 VPS53Q5VIR6 699 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 MFSD6Q6ZSS7 791 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 Q7L0L9 218 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 FGD4Q96M96 766 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 AGBL1Q96MI9 1066 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 MAF1Q9H063 256 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 OSBPL3Q9H4L5 887 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 CCPG1Q9ULG6 757 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms