RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 FOXP2O15409 715 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 DPYDQ12882 1025 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 EARS2Q5JPH6 523 aaKnown RBP14.03□□□□□ -0.16
LIG1-221ENST00000613670 TSGA10Q9BZW7 698 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 A0A087X0B3 334 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 LRRIQ3A6PVS8 624 aaPredicted RBP14.03□□□□□ -0.16
LIG1-221ENST00000613670 ADAMTS2O95450 1211 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 GNAQP50148 359 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 PPFIA1Q13136 1202 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 RPGRIP1Q96KN7 1286 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 PPP1R3GB7ZBB8 358 aa14.02□□□□□ -0.16
LIG1-221ENST00000613670 USP14P54578 494 aa14.02□□□□□ -0.16
LIG1-221ENST00000613670 MICALCLQ6ZW33 695 aa14.02□□□□□ -0.16
LIG1-221ENST00000613670 SV2BQ7L1I2 683 aa14.02□□□□□ -0.16
LIG1-221ENST00000613670 PNMA1Q8ND90 353 aa14.02□□□□□ -0.16
LIG1-221ENST00000613670 TRIM58Q8NG06 486 aa14.02□□□□□ -0.16
LIG1-221ENST00000613670 JRKLQ9Y4A0 524 aa14.02□□□□□ -0.16
LIG1-221ENST00000613670 CACNA1FO60840 1977 aa14.02□□□□□ -0.16
LIG1-221ENST00000613670 PPFIA4O75335 1185 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 HSPA2P54652 639 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 RASSF7Q02833 373 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 ALX1Q15699 326 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 MUM1L1Q5H9M0 696 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 CPVLQ9H3G5 476 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 AGPAT5Q9NUQ2 364 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 AKAP12Q02952 1782 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 SMIM22K7EJ46 135 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 NELFCDQ8IXH7 590 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 FBXL16Q8N461 479 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 C6orf50Q9HD87 102 aa14.02□□□□□ -0.17
LIG1-221ENST00000613670 SEMA3EO15041 775 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 CYP2D6P10635 497 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 LONP1P36776 959 aaKnown RBP14.01□□□□□ -0.17
LIG1-221ENST00000613670 NOX5Q96PH1 765 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 MLXIPQ9HAP2 919 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 FANCGO15287 622 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 CSF1RP07333 972 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 EEF1GP26641 437 aaKnown RBP14.01□□□□□ -0.17
LIG1-221ENST00000613670 MDM2Q00987 491 aaPredicted RBP14.01□□□□□ -0.17
LIG1-221ENST00000613670 SUSD4Q5VX71 490 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 SMARCAL1Q9NZC9 954 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 CAPN7Q9Y6W3 813 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 WDR17Q8IZU2 1322 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 LGALS16A8MUM7 142 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 MPHOSPH10O00566 681 aaKnown RBP14.01□□□□□ -0.17
LIG1-221ENST00000613670 EIF6P56537 245 aaKnown RBP14.01□□□□□ -0.17
LIG1-221ENST00000613670 GUCY2DQ02846 1103 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 KRT79Q5XKE5 535 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 CNNM4Q6P4Q7 775 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 GIMAP7Q8NHV1 300 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 MEGF6O75095 1541 aa14.01□□□□□ -0.17
LIG1-221ENST00000613670 SMIM23A6NLE4 172 aa14□□□□□ -0.17
LIG1-221ENST00000613670 MAGEA9P43362 315 aa14□□□□□ -0.17
LIG1-221ENST00000613670 LRRC41Q15345 812 aa14□□□□□ -0.17
LIG1-221ENST00000613670 TMTC3Q6ZXV5 915 aa14□□□□□ -0.17
LIG1-221ENST00000613670 CEP57Q86XR8 500 aa14□□□□□ -0.17
LIG1-221ENST00000613670 HPS3Q969F9 1004 aa14□□□□□ -0.17
LIG1-221ENST00000613670 DUSP10Q9Y6W6 482 aa14□□□□□ -0.17
LIG1-221ENST00000613670 EIF4A3P38919 411 aaKnown RBP14□□□□□ -0.17
LIG1-221ENST00000613670 LRP10Q7Z4F1 713 aa14□□□□□ -0.17
LIG1-221ENST00000613670 TRIM31Q9BZY9 425 aa14□□□□□ -0.17
LIG1-221ENST00000613670 PPANQ9NQ55 473 aaKnown RBP14□□□□□ -0.17
LIG1-221ENST00000613670 DISC1Q9NRI5 854 aa14□□□□□ -0.17
LIG1-221ENST00000613670 BIN2Q9UBW5 565 aaPredicted RBP14□□□□□ -0.17
LIG1-221ENST00000613670 HYOU1Q9Y4L1 999 aa14□□□□□ -0.17
LIG1-221ENST00000613670 SARSP49591 514 aaKnown RBP14□□□□□ -0.17
LIG1-221ENST00000613670 KLK7P49862 253 aa14□□□□□ -0.17
LIG1-221ENST00000613670 PDCLQ13371 301 aa14□□□□□ -0.17
LIG1-221ENST00000613670 CT47A1Q5JQC4 288 aaPredicted RBP14□□□□□ -0.17
LIG1-221ENST00000613670 IFT20Q8IY31 132 aa14□□□□□ -0.17
LIG1-221ENST00000613670 COG1Q8WTW3 980 aa14□□□□□ -0.17
LIG1-221ENST00000613670 P2RX5Q93086 422 aa14□□□□□ -0.17
LIG1-221ENST00000613670 NRXN3Q9Y4C0 1643 aa14□□□□□ -0.17
LIG1-221ENST00000613670 NCK2O43639 380 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 ZBED6P86452 979 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 CCDC43Q96MW1 224 aaKnown RBP13.99□□□□□ -0.17
LIG1-221ENST00000613670 LIMA1Q9UHB6 759 aaKnown RBP13.99□□□□□ -0.17
LIG1-221ENST00000613670 TMEM94Q12767 1356 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 ABCC12Q96J65 1359 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 ESYT3A0FGR9 886 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 TLDC2A0PJX2 215 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 PLCG1P19174 1290 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 TRIM28Q13263 835 aaKnown RBP13.99□□□□□ -0.17
LIG1-221ENST00000613670 NONOQ15233 471 aaKnown RBP eCLIP13.99□□□□□ -0.17
LIG1-221ENST00000613670 CFAP221Q4G0U5 840 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 SRBD1Q8N5C6 995 aaKnown RBP13.99□□□□□ -0.17
LIG1-221ENST00000613670 HNRNPLLQ8WVV9 542 aaKnown RBP13.99□□□□□ -0.17
LIG1-221ENST00000613670 XDHP47989 1333 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 BAG3O95817 575 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 HIBADHP31937 336 aaKnown RBP13.99□□□□□ -0.17
LIG1-221ENST00000613670 ATP2C1P98194 919 aaPredicted RBP13.99□□□□□ -0.17
LIG1-221ENST00000613670 NFRKBQ6P4R8 1299 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 UBLCP1Q8WVY7 318 aaPredicted RBP13.99□□□□□ -0.17
LIG1-221ENST00000613670 ZNF287Q9HBT7 754 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 PIK3C2AO00443 1686 aa13.99□□□□□ -0.17
LIG1-221ENST00000613670 DDAH1O94760 285 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 GNA11P29992 359 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 MAPKAPK5Q8IW41 473 aa13.98□□□□□ -0.17
LIG1-221ENST00000613670 RRP36Q96EU6 259 aaKnown RBP13.98□□□□□ -0.17
LIG1-221ENST00000613670 CCDC114Q96M63 670 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms