RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 RNF146Q9NTX7 359 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.58□□□□□ -0.56
VRK3-216ENST00000599342 ZMYM6O95789 1325 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 CCDC171Q6TFL3 1326 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 SYNRGQ9UMZ2 1314 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 A0A1W2PQ45 241 aaPredicted RBP11.57□□□□□ -0.56
VRK3-216ENST00000599342 A0A1W2PQY0 241 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 MOXD2PA6NHM9 499 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 POTEB2H3BUK9 544 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 ADAMTS4O75173 837 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 SNAI1O95863 264 aaPredicted RBP11.57□□□□□ -0.56
VRK3-216ENST00000599342 FGAP02671 866 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 HSPD1P10809 573 aaKnown RBP11.57□□□□□ -0.56
VRK3-216ENST00000599342 ALAS1P13196 640 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 NMIQ13287 307 aaPredicted RBP11.57□□□□□ -0.56
VRK3-216ENST00000599342 ACVR2BQ13705 512 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 RCSD1Q6JBY9 416 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 CCDC174Q6PII3 467 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 ARMCX2Q7L311 632 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 ZNF589Q86UQ0 364 aaPredicted RBP11.57□□□□□ -0.56
VRK3-216ENST00000599342 CHD1LQ86WJ1 897 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 SMC5Q8IY18 1101 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 NUP133Q8WUM0 1156 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 DCAF4Q8WV16 495 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 AGBL1Q96MI9 1066 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 TSEN34Q9BSV6 310 aaKnown RBP11.57□□□□□ -0.56
VRK3-216ENST00000599342 SPC25Q9HBM1 224 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 STARD7Q9NQZ5 370 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 PDLIM7Q9NR12 457 aa11.57□□□□□ -0.56
VRK3-216ENST00000599342 SZT2Q5T011 3432 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 DUSP11O75319 330 aaKnown RBP11.56□□□□□ -0.56
VRK3-216ENST00000599342 CLTBP09497 229 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 FGRP09769 529 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 C6orf222P0C671 652 aaPredicted RBP11.56□□□□□ -0.56
VRK3-216ENST00000599342 PCP11498 1178 aaKnown RBP11.56□□□□□ -0.56
VRK3-216ENST00000599342 HAND2P61296 217 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 MFSD6Q6ZSS7 791 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 CCDC144CPQ8IYA2 1237 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 DEFB123Q8N688 67 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 TRERF1Q96PN7 1200 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 A1CFQ9NQ94 594 aaKnown RBP11.56□□□□□ -0.56
VRK3-216ENST00000599342 CCPG1Q9ULG6 757 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 PRR12Q9ULL5 1215 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 TACC3Q9Y6A5 838 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 LAMA3Q16787 3333 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 ZNF536O15090 1300 aa11.56□□□□□ -0.56
VRK3-216ENST00000599342 ASB14A6NK59 587 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 PQBP1O60828 265 aaKnown RBP11.55□□□□□ -0.56
VRK3-216ENST00000599342 TOP1P11387 765 aaKnown RBP11.55□□□□□ -0.56
VRK3-216ENST00000599342 SDSP20132 328 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 NOVP48745 357 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 ACLYP53396 1101 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 SNAP25P60880 206 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 NUCB1Q02818 461 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 TLE2Q04725 743 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 CCDC144BQ3MJ40 725 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 RASGRP2Q7LDG7 609 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 FAM133AQ8N9E0 248 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 PCSK9Q8NBP7 692 aaKnown RBP11.55□□□□□ -0.56
VRK3-216ENST00000599342 BADQ92934 168 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 FGD4Q96M96 766 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 GLT1D1Q96MS3 346 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 RNF41Q9H4P4 317 aaPredicted RBP11.55□□□□□ -0.56
VRK3-216ENST00000599342 DIAPH3Q9NSV4 1193 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 TCP11L1Q9NUJ3 509 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 LTBP2Q14767 1821 aa11.55□□□□□ -0.56
VRK3-216ENST00000599342 DCDC2CA8MYV0 355 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 HIP1O00291 1037 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 ICAM1P05362 532 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 CST5P28325 142 aaPredicted RBP11.54□□□□□ -0.56
VRK3-216ENST00000599342 CNTN2Q02246 1040 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 KCNA10Q16322 511 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 AKNAD1Q5T1N1 836 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 SYDE2Q5VT97 1194 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 NSMFQ6X4W1 530 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 NOL8Q76FK4 1167 aaKnown RBP11.54□□□□□ -0.56
VRK3-216ENST00000599342 Q7L0L9 218 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 SH3RF1Q7Z6J0 888 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 PLEKHM2Q8IWE5 1019 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 KLHDC9Q8NEP7 349 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 EXOC6Q8TAG9 804 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 VTI1AQ96AJ9 217 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 TMEM47Q9BQJ4 181 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 OSBPL3Q9H4L5 887 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 TMEM39AQ9NV64 488 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 MROH7Q68CQ1 1323 aa11.54□□□□□ -0.56
VRK3-216ENST00000599342 FRMPD2Q68DX3 1309 aaPredicted RBP11.54□□□□□ -0.56
VRK3-216ENST00000599342 TRIM43BA6NCK2 446 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 MYADML2A6NDP7 307 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 ZNF213O14771 459 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 IGHDP01880 384 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 RAG1P15918 1043 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 SLC16A2P36021 539 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 GJA9P57773 515 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 MUM1L1Q5H9M0 696 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 CWC27Q6UX04 472 aaKnown RBP11.53□□□□□ -0.56
VRK3-216ENST00000599342 BTNL9Q6UXG8 535 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 ANKRD33Q7Z3H0 272 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 TBC1D10CQ8IV04 446 aa11.53□□□□□ -0.56
VRK3-216ENST00000599342 ESR2Q92731 530 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms