RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 A0A0G2JMZ2 1700 aa16.58■□□□□ 0.24
LIG1-218ENST00000599322 PGK2P07205 417 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 ALAS1P13196 640 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 MSL3Q8N5Y2 521 aaKnown RBP16.57■□□□□ 0.24
LIG1-218ENST00000599322 ARRDC4Q8NCT1 418 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 PNMA1Q8ND90 353 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 DIS3LQ8TF46 1054 aaKnown RBP16.57■□□□□ 0.24
LIG1-218ENST00000599322 TINF2Q9BSI4 451 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 HOMER2Q9NSB8 354 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 ZSWIM5Q9P217 1185 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 CCPG1Q9ULG6 757 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 RLFQ13129 1914 aa16.57■□□□□ 0.24
LIG1-218ENST00000599322 FRMPD2Q68DX3 1309 aaPredicted RBP16.56■□□□□ 0.24
LIG1-218ENST00000599322 POTEB2H3BUK9 544 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 EVI5O60447 810 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 PDHBP11177 359 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 ZNF792Q3KQV3 632 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 BMP2KLQ5H9B9 411 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 IFIT1BQ5T764 474 aaKnown RBP16.56■□□□□ 0.24
LIG1-218ENST00000599322 NCOA7Q8NI08 942 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 TRERF1Q96PN7 1200 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 C11orf49Q9H6J7 331 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 RNF146Q9NTX7 359 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 RIPK3Q9Y572 518 aa16.56■□□□□ 0.24
LIG1-218ENST00000599322 PFASO15067 1338 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 TNKSO95271 1327 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 SEPT4O43236 478 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 DHX16O60231 1041 aaKnown RBP16.55■□□□□ 0.24
LIG1-218ENST00000599322 ICAM1P05362 532 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 SLC16A2P36021 539 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 ZNF543Q08ER8 600 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 BTNL9Q6UXG8 535 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 ANKS1AQ92625 1134 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 AGBL1Q96MI9 1066 aa16.55■□□□□ 0.24
LIG1-218ENST00000599322 ZNF236Q9UL36 1845 aa16.54■□□□□ 0.24
LIG1-218ENST00000599322 MYCNP04198 464 aaPredicted RBP16.54■□□□□ 0.24
LIG1-218ENST00000599322 CYBAP13498 195 aa16.54■□□□□ 0.24
LIG1-218ENST00000599322 MNX1P50219 401 aaPredicted RBP16.54■□□□□ 0.24
LIG1-218ENST00000599322 PTH1RQ03431 593 aa16.54■□□□□ 0.24
LIG1-218ENST00000599322 ASPRV1Q53RT3 343 aa16.54■□□□□ 0.24
LIG1-218ENST00000599322 RNF20Q5VTR2 975 aa16.54■□□□□ 0.24
LIG1-218ENST00000599322 ZNF467Q7Z7K2 595 aaPredicted RBP16.54■□□□□ 0.24
LIG1-218ENST00000599322 MAP4K1Q92918 833 aa16.54■□□□□ 0.24
LIG1-218ENST00000599322 MPHOSPH6Q99547 160 aaKnown RBP16.54■□□□□ 0.24
LIG1-218ENST00000599322 KBTBD13C9JR72 458 aa16.53■□□□□ 0.24
LIG1-218ENST00000599322 IFIT3O14879 490 aaKnown RBP16.53■□□□□ 0.24
LIG1-218ENST00000599322 CYP21A2P08686 494 aa16.53■□□□□ 0.24
LIG1-218ENST00000599322 PARP1P09874 1014 aaKnown RBP16.53■□□□□ 0.24
LIG1-218ENST00000599322 RARBP10826 455 aa16.53■□□□□ 0.24
LIG1-218ENST00000599322 LHX8Q68G74 356 aa16.53■□□□□ 0.24
LIG1-218ENST00000599322 TTBK2Q6IQ55 1244 aa16.53■□□□□ 0.24
LIG1-218ENST00000599322 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.53■□□□□ 0.24
LIG1-218ENST00000599322 ESYT1Q9BSJ8 1104 aa16.53■□□□□ 0.24
LIG1-218ENST00000599322 RANBP17Q9H2T7 1088 aaKnown RBP16.53■□□□□ 0.24
LIG1-218ENST00000599322 ANO2Q9NQ90 1003 aa16.53■□□□□ 0.24
LIG1-218ENST00000599322 RBM8AQ9Y5S9 174 aaKnown RBP16.53■□□□□ 0.24
LIG1-218ENST00000599322 COL11A1P12107 1806 aaPredicted RBP16.53■□□□□ 0.24
LIG1-218ENST00000599322 PARP14Q460N5 1801 aa16.53■□□□□ 0.24
LIG1-218ENST00000599322 SYNGAP1Q96PV0 1343 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 ASB14A6NK59 587 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 B4DLN1 442 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 E7EWF7 191 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 SNHG28P0DPA3 235 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 AKR1A1P14550 325 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 MRPL12P52815 198 aaKnown RBP16.52■□□□□ 0.24
LIG1-218ENST00000599322 SNAP25P60880 206 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 PRAMEF19Q5SWL8 479 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 NSMFQ6X4W1 530 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 ENAHQ8N8S7 591 aaPredicted RBP16.52■□□□□ 0.24
LIG1-218ENST00000599322 IL25Q9H293 177 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 SPC25Q9HBM1 224 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 ADD3Q9UEY8 706 aaKnown RBP16.52■□□□□ 0.24
LIG1-218ENST00000599322 FAM184BQ9ULE4 1060 aa16.52■□□□□ 0.24
LIG1-218ENST00000599322 LAMA3Q16787 3333 aa16.52■□□□□ 0.23
LIG1-218ENST00000599322 DNAJC25-GNG10A0A024R161 153 aa16.51■□□□□ 0.23
LIG1-218ENST00000599322 DNM1LO00429 736 aa16.51■□□□□ 0.23
LIG1-218ENST00000599322 CDC45O75419 566 aa16.51■□□□□ 0.23
LIG1-218ENST00000599322 TRAF1Q13077 416 aa16.51■□□□□ 0.23
LIG1-218ENST00000599322 WTAPQ15007 396 aa16.51■□□□□ 0.23
LIG1-218ENST00000599322 RNF180Q86T96 592 aa16.51■□□□□ 0.23
LIG1-218ENST00000599322 ABHD16BQ9H3Z7 469 aa16.51■□□□□ 0.23
LIG1-218ENST00000599322 ZHX1Q9UKY1 873 aaPredicted RBP16.51■□□□□ 0.23
LIG1-218ENST00000599322 ZNF536O15090 1300 aa16.5■□□□□ 0.23
LIG1-218ENST00000599322 LAMA4Q16363 1823 aa16.5■□□□□ 0.23
LIG1-218ENST00000599322 GOLGA8HP0CJ92 632 aa16.5■□□□□ 0.23
LIG1-218ENST00000599322 ERICH6BQ5W0A0 696 aa16.5■□□□□ 0.23
LIG1-218ENST00000599322 MAMDC4Q6UXC1 1216 aa16.5■□□□□ 0.23
LIG1-218ENST00000599322 CATIPQ7Z7H3 387 aa16.5■□□□□ 0.23
LIG1-218ENST00000599322 TRPV1Q8NER1 839 aa16.5■□□□□ 0.23
LIG1-218ENST00000599322 A1CFQ9NQ94 594 aaKnown RBP16.5■□□□□ 0.23
LIG1-218ENST00000599322 XPNPEP3Q9NQH7 507 aa16.5■□□□□ 0.23
LIG1-218ENST00000599322 ZNFX1Q9P2E3 1918 aaKnown RBP16.5■□□□□ 0.23
LIG1-218ENST00000599322 WDR19Q8NEZ3 1342 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 PTPDC1A2A3K4 754 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 SOX1O00570 391 aaPredicted RBP16.49■□□□□ 0.23
LIG1-218ENST00000599322 IGHA2P01877 340 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 ACVR2BQ13705 512 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 TMEM67Q5HYA8 995 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 ANO1Q5XXA6 986 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 RASGRP2Q7LDG7 609 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms