RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 IPO9Q96P70 1041 aaKnown RBP12.55□□□□□ -0.4
USE1-204ENST00000594399 PIGSQ96S52 555 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 RANBP17Q9H2T7 1088 aaKnown RBP12.55□□□□□ -0.4
USE1-204ENST00000594399 VAT1LQ9HCJ6 419 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 ORC3Q9UBD5 711 aaPredicted RBP12.55□□□□□ -0.4
USE1-204ENST00000594399 hCG_1642624A0A1W2PR95 340 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 PDHXO00330 501 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 ZBTB5O15062 677 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 DTNBO60941 627 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 CAPN15O75808 1086 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 FDX1P10109 184 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 SCG2P13521 617 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 HERVK_113P62684 666 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 FAM43AQ8N2R8 423 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 SPRYD3Q8NCJ5 442 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 ATG4CQ96DT6 458 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 ZIC5Q96T25 663 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 ASCC2Q9H1I8 757 aaPredicted RBP12.54□□□□□ -0.4
USE1-204ENST00000594399 ZCCHC17Q9NP64 241 aaKnown RBP12.54□□□□□ -0.4
USE1-204ENST00000594399 SAGE1Q9NXZ1 904 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 HOXC10Q9NYD6 342 aa12.54□□□□□ -0.4
USE1-204ENST00000594399 CTDP1Q9Y5B0 961 aaPredicted RBP12.54□□□□□ -0.4
USE1-204ENST00000594399 V9GY48 417 aaPredicted RBP12.54□□□□□ -0.4
USE1-204ENST00000594399 PNMA6FA0A0J9YX94 578 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 hCG_1984214I3L0E3 225 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 IGF2BP3O00425 579 aaKnown RBP eCLIP12.53□□□□□ -0.4
USE1-204ENST00000594399 VWA5AO00534 786 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 ZBED4O75132 1171 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 FDPSP14324 419 aaKnown RBP12.53□□□□□ -0.4
USE1-204ENST00000594399 SNAP25P60880 206 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 PFKFB3Q16875 520 aaPredicted RBP12.53□□□□□ -0.4
USE1-204ENST00000594399 QRICH1Q2TAL8 776 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 OTUD7BQ6GQQ9 843 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 LBX2Q6XYB7 198 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 IFNL1Q8IU54 200 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 ZNF713Q8N859 430 aaPredicted RBP12.53□□□□□ -0.4
USE1-204ENST00000594399 MB21D1Q8N884 522 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 GTF3C2Q8WUA4 911 aaPredicted RBP12.53□□□□□ -0.4
USE1-204ENST00000594399 PARK7Q99497 189 aaKnown RBP12.53□□□□□ -0.4
USE1-204ENST00000594399 PTPN18Q99952 460 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 ALG1Q9BT22 464 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 SLC38A10Q9HBR0 1119 aa12.53□□□□□ -0.4
USE1-204ENST00000594399 TRAF1Q13077 416 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 PKN1Q16512 942 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 WWC2Q6AWC2 1192 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 PPP1R18Q6NYC8 613 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 CCDC174Q6PII3 467 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 HEATR3Q7Z4Q2 680 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 SMCR8Q8TEV9 937 aaPredicted RBP12.52□□□□□ -0.41
USE1-204ENST00000594399 GPKOWQ92917 476 aaPredicted RBP eCLIP12.52□□□□□ -0.41
USE1-204ENST00000594399 P2RX7Q99572 595 aaKnown RBP12.52□□□□□ -0.41
USE1-204ENST00000594399 AMNQ9BXJ7 453 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 CWC22Q9HCG8 908 aaKnown RBP12.52□□□□□ -0.41
USE1-204ENST00000594399 TSKSQ9UJT2 592 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 PNMA2Q9UL42 364 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 ADAMTS5Q9UNA0 930 aa12.52□□□□□ -0.41
USE1-204ENST00000594399 COL11A1P12107 1806 aaPredicted RBP12.52□□□□□ -0.41
USE1-204ENST00000594399 RBBP6Q7Z6E9 1792 aaKnown RBP12.51□□□□□ -0.41
USE1-204ENST00000594399 PPP1R11O60927 126 aaPredicted RBP12.51□□□□□ -0.41
USE1-204ENST00000594399 ICAM1P05362 532 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 CYP2C8P10632 490 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 XBP1P17861 261 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 PDCP20941 246 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 TM4SF4P48230 202 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 OAZ1P54368 228 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 TAF1CQ15572 869 aaPredicted RBP12.51□□□□□ -0.41
USE1-204ENST00000594399 FBXO11Q86XK2 927 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 REPS2Q8NFH8 660 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 CCDC148Q8NFR7 591 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 CCDC12Q8WUD4 166 aaPredicted RBP12.51□□□□□ -0.41
USE1-204ENST00000594399 C8orf76Q96K31 380 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 AIFM3Q96NN9 605 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 TEX13BQ9BXU2 312 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 RNF186Q9NXI6 227 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 BARHL2Q9NY43 387 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 ZNF214Q9UL59 606 aaPredicted RBP12.51□□□□□ -0.41
USE1-204ENST00000594399 CCPG1Q9ULG6 757 aa12.51□□□□□ -0.41
USE1-204ENST00000594399 STXBP3O00186 592 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 TRPA1O75762 1119 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 GCLCP48506 637 aaPredicted RBP12.5□□□□□ -0.41
USE1-204ENST00000594399 FOSBP53539 338 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 NAPAP54920 295 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 TRIM29Q14134 588 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 TMEM132BQ14DG7 1078 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 USH1GQ495M9 461 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 CPXCR1Q8N123 301 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 FAM177A1Q8N128 213 aaPredicted RBP12.5□□□□□ -0.41
USE1-204ENST00000594399 PAGR1Q9BTK6 254 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 RAVER2Q9HCJ3 691 aaKnown RBP12.5□□□□□ -0.41
USE1-204ENST00000594399 SH3GLB2Q9NR46 395 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 VPS54Q9P1Q0 977 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 RABGAP1Q9Y3P9 1069 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 PCDHA1Q9Y5I3 950 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 ZNF536O15090 1300 aa12.5□□□□□ -0.41
USE1-204ENST00000594399 BAZ2BQ9UIF8 2168 aaKnown RBP12.49□□□□□ -0.41
USE1-204ENST00000594399 ABCB11O95342 1321 aa12.49□□□□□ -0.41
USE1-204ENST00000594399 ADGRA2Q96PE1 1338 aa12.49□□□□□ -0.41
USE1-204ENST00000594399 ATP2A1O14983 1001 aa12.49□□□□□ -0.41
USE1-204ENST00000594399 ALDH1A1P00352 501 aa12.49□□□□□ -0.41
USE1-204ENST00000594399 PLS1Q14651 629 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms