RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 RNF180Q86T96 592 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 C7orf61Q8IZ16 206 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 CHMP4CQ96CF2 233 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 TRERF1Q96PN7 1200 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 SPC25Q9HBM1 224 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 FAM184BQ9ULE4 1060 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 RIPK3Q9Y572 518 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 RLFQ13129 1914 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 DNAJC25-GNG10A0A024R161 153 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 ASB14A6NK59 587 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 PDHBP11177 359 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 COL6A1P12109 1028 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 CHMLP26374 656 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 MAMDC4Q6UXC1 1216 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 CENPQQ7L2Z9 268 aaPredicted RBP12.88□□□□□ -0.35
LIG3-214ENST00000592244 TRPV1Q8NER1 839 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 AGBL1Q96MI9 1066 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 ZSCAN10Q96SZ4 725 aaPredicted RBP12.88□□□□□ -0.35
LIG3-214ENST00000592244 MPHOSPH6Q99547 160 aaKnown RBP12.88□□□□□ -0.35
LIG3-214ENST00000592244 SENP6Q9GZR1 1112 aaPredicted RBP12.88□□□□□ -0.35
LIG3-214ENST00000592244 ABHD16BQ9H3Z7 469 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 GPCPD1Q9NPB8 672 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 XPNPEP3Q9NQH7 507 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 PRKAG2Q9UGJ0 569 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 TACC3Q9Y6A5 838 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 NEDD4P46934 1319 aa12.88□□□□□ -0.35
LIG3-214ENST00000592244 ERICH2A1L162 156 aa12.87□□□□□ -0.35
LIG3-214ENST00000592244 B4E1Z4 1266 aa12.87□□□□□ -0.35
LIG3-214ENST00000592244 MNX1P50219 401 aaPredicted RBP12.87□□□□□ -0.35
LIG3-214ENST00000592244 ZNF543Q08ER8 600 aa12.87□□□□□ -0.35
LIG3-214ENST00000592244 SART3Q15020 963 aaKnown RBP12.87□□□□□ -0.35
LIG3-214ENST00000592244 PRAMEF19Q5SWL8 479 aa12.87□□□□□ -0.35
LIG3-214ENST00000592244 CHRDL2Q6WN34 429 aa12.87□□□□□ -0.35
LIG3-214ENST00000592244 RALYLQ86SE5 291 aaKnown RBP12.87□□□□□ -0.35
LIG3-214ENST00000592244 PNMA1Q8ND90 353 aa12.87□□□□□ -0.35
LIG3-214ENST00000592244 RANBP17Q9H2T7 1088 aaKnown RBP12.87□□□□□ -0.35
LIG3-214ENST00000592244 ZHX1Q9UKY1 873 aaPredicted RBP12.87□□□□□ -0.35
LIG3-214ENST00000592244 COLQQ9Y215 455 aaPredicted RBP12.87□□□□□ -0.35
LIG3-214ENST00000592244 FRMPD2Q68DX3 1309 aaPredicted RBP12.87□□□□□ -0.35
LIG3-214ENST00000592244 A0A1W2PPC1 479 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 B4DLN1 442 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 SNHG28P0DPA3 235 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 SLC16A2P36021 539 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 MRPL12P52815 198 aaKnown RBP12.86□□□□□ -0.35
LIG3-214ENST00000592244 ACVR2BQ13705 512 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 ASPRV1Q53RT3 343 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 GJC2Q5T442 439 aaPredicted RBP12.86□□□□□ -0.35
LIG3-214ENST00000592244 IFIT1BQ5T764 474 aaKnown RBP12.86□□□□□ -0.35
LIG3-214ENST00000592244 CASC1Q6TDU7 716 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 ANKS1AQ92625 1134 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 ZKSCAN3Q9BRR0 538 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 A1CFQ9NQ94 594 aaKnown RBP12.86□□□□□ -0.35
LIG3-214ENST00000592244 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.86□□□□□ -0.35
LIG3-214ENST00000592244 ZSWIM5Q9P217 1185 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 ADD3Q9UEY8 706 aaKnown RBP12.86□□□□□ -0.35
LIG3-214ENST00000592244 MYH4Q9Y623 1939 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 ZNF536O15090 1300 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 TNKSO95271 1327 aa12.86□□□□□ -0.35
LIG3-214ENST00000592244 CEP290O15078 2479 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 LOC102724159A0A0B4J2E5 919 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 SGSM2O43147 1006 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 SLC34A2O95436 690 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 ZNF865P0CJ78 1059 aaPredicted RBP12.85□□□□□ -0.35
LIG3-214ENST00000592244 PWP2Q15269 919 aaKnown RBP12.85□□□□□ -0.35
LIG3-214ENST00000592244 LRRC41Q15345 812 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 ANO1Q5XXA6 986 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 TTBK2Q6IQ55 1244 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 NSMFQ6X4W1 530 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 ARMCX2Q7L311 632 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 LBHD1Q9BQE6 289 aaPredicted RBP12.85□□□□□ -0.35
LIG3-214ENST00000592244 MAF1Q9H063 256 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 WDR19Q8NEZ3 1342 aa12.85□□□□□ -0.35
LIG3-214ENST00000592244 DHX16O60231 1041 aaKnown RBP12.84□□□□□ -0.35
LIG3-214ENST00000592244 DUSP11O75319 330 aaKnown RBP12.84□□□□□ -0.35
LIG3-214ENST00000592244 NEFLP07196 543 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 PARP1P09874 1014 aaKnown RBP12.84□□□□□ -0.35
LIG3-214ENST00000592244 SNAP25P60880 206 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 TRAF1Q13077 416 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 LRRC26Q2I0M4 334 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 NOL8Q76FK4 1167 aaKnown RBP12.84□□□□□ -0.35
LIG3-214ENST00000592244 CCDC144CPQ8IYA2 1237 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 ENAHQ8N8S7 591 aaPredicted RBP12.84□□□□□ -0.35
LIG3-214ENST00000592244 FAM133AQ8N9E0 248 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 PCSK9Q8NBP7 692 aaKnown RBP12.84□□□□□ -0.35
LIG3-214ENST00000592244 NCOA7Q8NI08 942 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 NUP133Q8WUM0 1156 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 TSEN34Q9BSV6 310 aaKnown RBP12.84□□□□□ -0.35
LIG3-214ENST00000592244 CYP39A1Q9NYL5 469 aa12.84□□□□□ -0.35
LIG3-214ENST00000592244 ZMYND8Q9ULU4 1186 aaPredicted RBP12.84□□□□□ -0.35
LIG3-214ENST00000592244 PTPDC1A2A3K4 754 aa12.83□□□□□ -0.36
LIG3-214ENST00000592244 MOXD2PA6NHM9 499 aa12.83□□□□□ -0.36
LIG3-214ENST00000592244 SNAI1O95863 264 aaPredicted RBP12.83□□□□□ -0.36
LIG3-214ENST00000592244 TAL1P17542 331 aaPredicted RBP12.83□□□□□ -0.36
LIG3-214ENST00000592244 ADCYAP1R1P41586 468 aa12.83□□□□□ -0.36
LIG3-214ENST00000592244 ATN1P54259 1190 aaPredicted RBP12.83□□□□□ -0.36
LIG3-214ENST00000592244 CNTN2Q02246 1040 aa12.83□□□□□ -0.36
LIG3-214ENST00000592244 SLC39A5Q6ZMH5 540 aa12.83□□□□□ -0.36
LIG3-214ENST00000592244 RBM27Q9P2N5 1060 aaKnown RBP12.83□□□□□ -0.36
LIG3-214ENST00000592244 PARP14Q460N5 1801 aa12.83□□□□□ -0.36
LIG3-214ENST00000592244 IFIT3O14879 490 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms