RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 PTGDRQ13258 359 aa12.21□□□□□ -0.46
VPS4B-206ENST00000591475 IFIT1BQ5T764 474 aaKnown RBP12.21□□□□□ -0.46
VPS4B-206ENST00000591475 ENAHQ8N8S7 591 aaPredicted RBP12.21□□□□□ -0.46
VPS4B-206ENST00000591475 CNKSR1Q969H4 720 aa12.21□□□□□ -0.46
VPS4B-206ENST00000591475 RHOXF2Q9BQY4 288 aa12.21□□□□□ -0.46
VPS4B-206ENST00000591475 VPS16Q9H269 839 aa12.21□□□□□ -0.46
VPS4B-206ENST00000591475 RMND1Q9NWS8 449 aa12.21□□□□□ -0.46
VPS4B-206ENST00000591475 VPS18Q9P253 973 aa12.21□□□□□ -0.46
VPS4B-206ENST00000591475 V9GY48 417 aaPredicted RBP12.21□□□□□ -0.46
VPS4B-206ENST00000591475 MAGEB6P1A0A0J9YX57 407 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 PLEKHA8P1O95397 391 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 ARHGAP25P42331 645 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 E2F4Q16254 413 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 TCP11X2Q5H9J9 407 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 STAMQ92783 540 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 TNFRSF25Q93038 417 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 TRERF1Q96PN7 1200 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 ACBD3Q9H3P7 528 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 GNL3LQ9NVN8 582 aaKnown RBP12.2□□□□□ -0.46
VPS4B-206ENST00000591475 TAB2Q9NYJ8 693 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 MYO6Q9UM54 1294 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 hCG_1642624A0A1W2PR95 340 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 WTIPA6NIX2 430 aaPredicted RBP12.2□□□□□ -0.46
VPS4B-206ENST00000591475 KCNJ18B7U540 433 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 WNT7AO00755 349 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 ATP2B4P23634 1241 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 CHRNA5P30532 468 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 ACTN2P35609 894 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 GPSM2P81274 684 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 KCNJ12Q14500 433 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 ZNF658Q5TYW1 1059 aaPredicted RBP12.2□□□□□ -0.46
VPS4B-206ENST00000591475 PDXDC2PQ6P474 469 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 LEKR1Q6ZMV7 388 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 SDR42E1Q8WUS8 393 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 NELFBQ8WX92 580 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 FAM84BQ96KN1 310 aaPredicted RBP12.2□□□□□ -0.46
VPS4B-206ENST00000591475 BLZF1Q9H2G9 400 aa12.2□□□□□ -0.46
VPS4B-206ENST00000591475 COBLO75128 1261 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 DDAH1O94760 285 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 KRT9P35527 623 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 GYG1P46976 350 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 TRAPPC10P48553 1259 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 VSNL1P62760 191 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 CASP8Q14790 479 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 HSP90B2PQ58FF3 399 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 IQCA1Q86XH1 822 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 BBXQ8WY36 941 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-206ENST00000591475 SLF1Q9BQI6 1058 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 FEZ2Q9UHY8 353 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-206ENST00000591475 GGA1Q9UJY5 639 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 A0A1B0GUL6 1792 aa12.19□□□□□ -0.46
VPS4B-206ENST00000591475 COL11A2P13942 1736 aaPredicted RBP12.18□□□□□ -0.46
VPS4B-206ENST00000591475 ABL1P00519 1130 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 PCP11498 1178 aaKnown RBP12.18□□□□□ -0.46
VPS4B-206ENST00000591475 CDC25AP30304 524 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 HIBADHP31937 336 aaKnown RBP12.18□□□□□ -0.46
VPS4B-206ENST00000591475 TGFB2P61812 414 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 AMPD2Q01433 879 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 C15orf52Q6ZUT6 534 aaKnown RBP12.18□□□□□ -0.46
VPS4B-206ENST00000591475 TMTC3Q6ZXV5 915 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 FBXO33Q7Z6M2 555 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 CCDC148Q8NFR7 591 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 FAM71BQ8TC56 605 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 EPN1Q9Y6I3 576 aaPredicted RBP12.18□□□□□ -0.46
VPS4B-206ENST00000591475 CNTNAP5Q8WYK1 1306 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 RNF225M0QZC1 329 aaPredicted RBP12.18□□□□□ -0.46
VPS4B-206ENST00000591475 UFL1O94874 794 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 IVLP07476 585 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 UBXN1Q04323 297 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 TROAPQ12815 778 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 NPY5RQ15761 445 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 NOM1Q5C9Z4 860 aaKnown RBP12.18□□□□□ -0.46
VPS4B-206ENST00000591475 WDR93Q6P2C0 686 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 ADGRA1Q86SQ6 560 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 SGIP1Q9BQI5 828 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 FAN1Q9Y2M0 1017 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 LAMB1P07942 1786 aa12.18□□□□□ -0.46
VPS4B-206ENST00000591475 CACNA1SQ13698 1873 aa12.17□□□□□ -0.46
VPS4B-206ENST00000591475 H7C1D1 291 aa12.17□□□□□ -0.46
VPS4B-206ENST00000591475 NDUFA10O95299 355 aa12.17□□□□□ -0.46
VPS4B-206ENST00000591475 TFRCP02786 760 aaKnown RBP12.17□□□□□ -0.46
VPS4B-206ENST00000591475 RPN1P04843 607 aaKnown RBP12.17□□□□□ -0.46
VPS4B-206ENST00000591475 NOA1Q8NC60 698 aaKnown RBP12.17□□□□□ -0.46
VPS4B-206ENST00000591475 TBC1D16Q8TBP0 767 aa12.17□□□□□ -0.46
VPS4B-206ENST00000591475 SUGCTQ9HAC7 445 aa12.17□□□□□ -0.46
VPS4B-206ENST00000591475 ABCF2Q9UG63 623 aa12.17□□□□□ -0.46
VPS4B-206ENST00000591475 IQSEC3Q9UPP2 1182 aaPredicted RBP12.17□□□□□ -0.46
VPS4B-206ENST00000591475 IRS2Q9Y4H2 1338 aa12.17□□□□□ -0.46
VPS4B-206ENST00000591475 LRRC37AA6NMS7 1700 aa12.17□□□□□ -0.46
VPS4B-206ENST00000591475 N4BP1O75113 896 aaKnown RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 MCM3P25205 808 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 KLRK1P26718 216 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 MCM7P33993 719 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 NLRP5P59047 1200 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 TSR1Q2NL82 804 aaKnown RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 CC2D2BQ6DHV5 1058 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 NCAPH2Q6IBW4 605 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 DPP8Q6V1X1 898 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 PIK3AP1Q6ZUJ8 805 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 ZNF804AQ7Z570 1209 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms