RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 SLFN13Q68D06 897 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 RASGRP2Q7LDG7 609 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 ARMC9Q7Z3E5 817 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 CCDC144CPQ8IYA2 1237 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 ANKRD13AQ8IZ07 590 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 ACER1Q8TDN7 264 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 NLRP7Q8WX94 980 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 ZKSCAN4Q969J2 545 aaPredicted RBP11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 C12orf42Q96LP6 360 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 SPZ1Q9BXG8 430 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 AS3MTQ9HBK9 375 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 FZD1Q9UP38 647 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 RLFQ13129 1914 aa11.46□□□□□ -0.58
SMCHD1-212ENST00000585229 F5H6K3 240 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 TRAF5O00463 557 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 PLA2G6O60733 806 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 KLRC3Q07444 240 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 USP17L2Q6R6M4 530 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 BTNL9Q6UXG8 535 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 STAG2Q8N3U4 1231 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 SRBD1Q8N5C6 995 aaKnown RBP11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 RBM46Q8TBY0 533 aaKnown RBP11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 ZNF526Q8TF50 670 aaPredicted RBP11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 RIOX1Q9H6W3 641 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 GOPCQ9HD26 462 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 PICK1Q9NRD5 415 aa11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 BAZ2BQ9UIF8 2168 aaKnown RBP11.45□□□□□ -0.58
SMCHD1-212ENST00000585229 PASKQ96RG2 1323 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 RCCD1A6NED2 376 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 SPDYE5A6NIY4 337 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 USP17L10C9JJH3 530 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 PRPF3O43395 683 aaKnown RBP11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 CYTH3O43739 400 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 DEXIO95424 95 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 PDCP20941 246 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 ATP2B2Q01814 1243 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 SH3D19Q5HYK7 790 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 KIAA1755Q5JYT7 1200 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 CCDC84Q86UT8 332 aaPredicted RBP11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 ZNF280CQ8ND82 737 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 LPAR1Q92633 364 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 MTMR8Q96EF0 704 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 GPBP1L1Q9HC44 474 aaPredicted RBP11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 CHMP5Q9NZZ3 219 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 ORC3Q9UBD5 711 aaPredicted RBP11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 KIF3AQ9Y496 699 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 AFG3L2Q9Y4W6 797 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 CSADQ9Y600 493 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 MYH15Q9Y2K3 1946 aa11.44□□□□□ -0.58
SMCHD1-212ENST00000585229 C19orf81C9J6K1 198 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 KLRF2D3W0D1 207 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 WDR46O15213 610 aaKnown RBP11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 BRD1O95696 1058 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 OATP04181 439 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 BMP3P12645 472 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 SLC1A4P43007 532 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 USP14P54578 494 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 BACE1P56817 501 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 NUCB2P80303 420 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 PPATQ06203 517 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 FMR1Q06787 632 aaKnown RBP eCLIP11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 SSRP1Q08945 709 aaKnown RBP11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 PRKG1Q13976 671 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 PKN1Q16512 942 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 MOB2Q70IA6 237 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 ERO1BQ86YB8 467 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 TRIM22Q8IYM9 498 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 FAM177A1Q8N128 213 aaPredicted RBP11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 PHKBQ93100 1093 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 RNF166Q96A37 237 aaPredicted RBP11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 KCTD12Q96CX2 325 aaKnown RBP11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 DDX11Q96FC9 970 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 SLC26A6Q9BXS9 759 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 GBA2Q9HCG7 927 aaPredicted RBP11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 KCNH4Q9UQ05 1017 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 A0A0G2JMZ2 1700 aa11.43□□□□□ -0.58
SMCHD1-212ENST00000585229 GOLGA8HP0CJ92 632 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 SYT1P21579 422 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 SPP2Q13103 211 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 PPIL2Q13356 520 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 PFKFB3Q16875 520 aaPredicted RBP11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 CCDC96Q2M329 555 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 CMTR1Q8N1G2 835 aaKnown RBP11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 FAM184AQ8NB25 1140 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 WASF1Q92558 559 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 WNT2BQ93097 391 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 CLMNQ96JQ2 1002 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 FEZ1Q99689 392 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 ZDHHC9Q9Y397 364 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 ZHX2Q9Y6X8 837 aa11.42□□□□□ -0.58
SMCHD1-212ENST00000585229 FRMPD2Q68DX3 1309 aaPredicted RBP11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 CXCL11O14625 94 aa11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 TRIM66O15016 1216 aa11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 STX6O43752 255 aa11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 DTNBO60941 627 aa11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 CELF2O95319 508 aaKnown RBP11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 DNAJB2P25686 324 aa11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 MTMR2Q13614 643 aa11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 TTLL12Q14166 644 aaPredicted RBP11.41□□□□□ -0.58
SMCHD1-212ENST00000585229 SWT1Q5T5J6 900 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms