RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PCDHA1Q9Y5I3 950 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 PTPRFP10586 1907 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 SMCO2A6NFE2 343 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 CXCL11O14625 94 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 PRPF38AQ8NAV1 312 aaKnown RBP28.88■■■□□ 2.21
SHMT1-207ENST00000580002 TNFRSF25Q93038 417 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 PPP1R9AQ9ULJ8 1098 aa28.88■■■□□ 2.21
SHMT1-207ENST00000580002 PEX10O60683 326 aa28.87■■■□□ 2.21
SHMT1-207ENST00000580002 KRT2P35908 639 aa28.87■■■□□ 2.21
SHMT1-207ENST00000580002 HUNKP57058 714 aa28.87■■■□□ 2.21
SHMT1-207ENST00000580002 FBXO11Q86XK2 927 aa28.87■■■□□ 2.21
SHMT1-207ENST00000580002 RGS22Q8NE09 1264 aa28.87■■■□□ 2.21
SHMT1-207ENST00000580002 GNL2Q13823 731 aaKnown RBP28.86■■■□□ 2.21
SHMT1-207ENST00000580002 SAFBQ15424 915 aaKnown RBP eCLIP28.86■■■□□ 2.21
SHMT1-207ENST00000580002 POTEEQ6S8J3 1075 aa28.86■■■□□ 2.21
SHMT1-207ENST00000580002 AGBL1Q96MI9 1066 aa28.86■■■□□ 2.21
SHMT1-207ENST00000580002 ZMYND12Q9H0C1 365 aa28.86■■■□□ 2.21
SHMT1-207ENST00000580002 PCDHA4Q9UN74 947 aa28.86■■■□□ 2.21
SHMT1-207ENST00000580002 ZNF536O15090 1300 aa28.86■■■□□ 2.21
SHMT1-207ENST00000580002 CEBPZQ03701 1054 aaKnown RBP28.85■■■□□ 2.21
SHMT1-207ENST00000580002 BLIDQ8IZY5 108 aa28.85■■■□□ 2.21
SHMT1-207ENST00000580002 FOXP1Q9H334 677 aaPredicted RBP28.85■■■□□ 2.21
SHMT1-207ENST00000580002 M0R2N6 131 aa28.85■■■□□ 2.21
SHMT1-207ENST00000580002 NCLP19338 710 aaKnown RBP28.85■■■□□ 2.21
SHMT1-207ENST00000580002 MCM4P33991 863 aa28.85■■■□□ 2.21
SHMT1-207ENST00000580002 NBR1Q14596 966 aa28.85■■■□□ 2.21
SHMT1-207ENST00000580002 NOSTRINQ8IVI9 506 aa28.85■■■□□ 2.21
SHMT1-207ENST00000580002 AMNQ9BXJ7 453 aa28.85■■■□□ 2.21
SHMT1-207ENST00000580002 TMEM260Q9NX78 707 aa28.85■■■□□ 2.21
SHMT1-207ENST00000580002 TCHHQ07283 1943 aa28.84■■■□□ 2.21
SHMT1-207ENST00000580002 YY1P25490 414 aa28.84■■■□□ 2.21
SHMT1-207ENST00000580002 DSG3P32926 999 aa28.84■■■□□ 2.21
SHMT1-207ENST00000580002 MYSM1Q5VVJ2 828 aa28.84■■■□□ 2.21
SHMT1-207ENST00000580002 CPXCR1Q8N123 301 aa28.84■■■□□ 2.21
SHMT1-207ENST00000580002 RAVER2Q9HCJ3 691 aaKnown RBP28.84■■■□□ 2.21
SHMT1-207ENST00000580002 PCDHA6Q9UN73 950 aa28.84■■■□□ 2.21
SHMT1-207ENST00000580002 PCDHA8Q9Y5H6 950 aa28.84■■■□□ 2.21
SHMT1-207ENST00000580002 RLFQ13129 1914 aa28.84■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L15C9J2P7 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L13C9JLJ4 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L11C9JVI0 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L18D6R9N7 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L22D6RA61 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L17D6RBQ6 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L19D6RCP7 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L20D6RJB6 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP17L24Q0WX57 530 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 UBE2SQ16763 222 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 GPAT2Q6NUI2 795 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 SMC1BQ8NDV3 1235 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 CCDC148Q8NFR7 591 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 USP28Q96RU2 1077 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 SLC38A10Q9HBR0 1119 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 BIN2Q9UBW5 565 aaPredicted RBP28.83■■■□□ 2.21
SHMT1-207ENST00000580002 TRPM7Q96QT4 1865 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 UNCXA6NJT0 531 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 VWA5AO00534 786 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 WNT7AO00755 349 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 OPLAHO14841 1288 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 TOB1P50616 345 aaPredicted RBP28.83■■■□□ 2.21
SHMT1-207ENST00000580002 COG2Q14746 738 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 ZNF784Q8NCA9 323 aaPredicted RBP28.83■■■□□ 2.21
SHMT1-207ENST00000580002 TBC1D5Q92609 795 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 MS4A4AQ96JQ5 239 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 GBP4Q96PP9 640 aa28.83■■■□□ 2.21
SHMT1-207ENST00000580002 BRAPQ7Z569 592 aa28.82■■■□□ 2.2
SHMT1-207ENST00000580002 SAPCD2Q86UD0 394 aa28.82■■■□□ 2.2
SHMT1-207ENST00000580002 PGBD1Q96JS3 809 aa28.82■■■□□ 2.2
SHMT1-207ENST00000580002 ATP6V1DQ9Y5K8 247 aa28.82■■■□□ 2.2
SHMT1-207ENST00000580002 hCG_1984214I3L0E3 225 aa28.81■■■□□ 2.2
SHMT1-207ENST00000580002 FIBPO43427 364 aa28.81■■■□□ 2.2
SHMT1-207ENST00000580002 CALML3P27482 149 aa28.81■■■□□ 2.2
SHMT1-207ENST00000580002 SPRYD7Q5W111 196 aa28.81■■■□□ 2.2
SHMT1-207ENST00000580002 PIK3AP1Q6ZUJ8 805 aa28.81■■■□□ 2.2
SHMT1-207ENST00000580002 ZNF713Q8N859 430 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-207ENST00000580002 DAGLBQ8NCG7 672 aa28.81■■■□□ 2.2
SHMT1-207ENST00000580002 PROCA1Q8NCQ7 364 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-207ENST00000580002 P2RX7Q99572 595 aaKnown RBP28.81■■■□□ 2.2
SHMT1-207ENST00000580002 C6orf50Q9HD87 102 aa28.81■■■□□ 2.2
SHMT1-207ENST00000580002 CLIC4Q9Y696 253 aa28.81■■■□□ 2.2
SHMT1-207ENST00000580002 SPDYE16A6NNV3 312 aaPredicted RBP28.8■■■□□ 2.2
SHMT1-207ENST00000580002 ATP2B1P20020 1258 aa28.8■■■□□ 2.2
SHMT1-207ENST00000580002 SNAPC2Q13487 334 aa28.8■■■□□ 2.2
SHMT1-207ENST00000580002 JAKMIP3Q5VZ66 844 aa28.8■■■□□ 2.2
SHMT1-207ENST00000580002 REPS2Q8NFH8 660 aa28.8■■■□□ 2.2
SHMT1-207ENST00000580002 ADCY7P51828 1080 aa28.8■■■□□ 2.2
SHMT1-207ENST00000580002 USP17L6PQ6QN14 398 aa28.8■■■□□ 2.2
SHMT1-207ENST00000580002 CCDC12Q8WUD4 166 aaPredicted RBP28.8■■■□□ 2.2
SHMT1-207ENST00000580002 ADAMTS5Q9UNA0 930 aa28.8■■■□□ 2.2
SHMT1-207ENST00000580002 PARP14Q460N5 1801 aa28.8■■■□□ 2.2
SHMT1-207ENST00000580002 ESYT2A0FGR8 921 aa28.79■■■□□ 2.2
SHMT1-207ENST00000580002 TOMM70O94826 608 aa28.79■■■□□ 2.2
SHMT1-207ENST00000580002 PSTPIP2Q9H939 334 aa28.79■■■□□ 2.2
SHMT1-207ENST00000580002 BRMS1Q9HCU9 246 aa28.79■■■□□ 2.2
SHMT1-207ENST00000580002 RIC8AQ9NPQ8 531 aa28.79■■■□□ 2.2
SHMT1-207ENST00000580002 AGTPBP1Q9UPW5 1226 aa28.79■■■□□ 2.2
SHMT1-207ENST00000580002 ICAM1P05362 532 aa28.78■■■□□ 2.2
SHMT1-207ENST00000580002 HOXA7P31268 230 aaPredicted RBP28.78■■■□□ 2.2
SHMT1-207ENST00000580002 TPRNQ4KMQ1 711 aa28.78■■■□□ 2.2
SHMT1-207ENST00000580002 BRI3BPQ8WY22 251 aa28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms